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Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity : Overview and Recommendations. / Capo, Eric; Giguet-Covex, Charline; Rouillard, Alexandra; Nota, Kevin; Heintzman, Peter D.; Vuillemin, Aurele; Ariztegui, Daniel; Arnaud, Fabien; Belle, Simon; Bertilsson, Stefan; Bigler, Christian; Bindler, Richard; Brown, Antony G.; Clarke, Charlotte L.; Crump, Sarah E.; Debroas, Didier; Englund, Göran; Ficetola, Gentile Francesco; Garner, Rebecca E.; Gauthier, Joanna; Gregory-Eaves, Irene; Heinecke, Liv; Herzschuh, Ulrike; Ibrahim, Anan; Kisand, Veljo; Kjær, Kurt H.; Lammers, Youri; Littlefair, Joanne; Messager, Erwan; Monchamp, Marie-Eve; Olajos, Fredrik; Orsi, William; Pedersen, Mikkel W.; Rijal, Dilli P.; Rydberg, Johan; Spanbauer, Trisha; Stoof-Leichsenring, Kathleen R.; Taberlet, Pierre; Talas, Liisi; Thomas, Camille; Walsh, David A.; Wang, Yucheng; Willerslev, Eske; van Woerkom, Anne; Zimmermann, Heike H.; Coolen, Marco J. L.; Epp, Laura S.; Domaizon, Isabelle; Alsos, Inger G.; Parducci, Laura.
In:
Quaternary, Vol. 4, No. 1, 6, 2021.
Research output: Contribution to journal › Review › Research › peer-review
Harvard
Capo, E, Giguet-Covex, C
, Rouillard, A, Nota, K, Heintzman, PD, Vuillemin, A, Ariztegui, D, Arnaud, F, Belle, S, Bertilsson, S, Bigler, C, Bindler, R, Brown, AG, Clarke, CL, Crump, SE, Debroas, D, Englund, G, Ficetola, GF, Garner, RE, Gauthier, J, Gregory-Eaves, I, Heinecke, L, Herzschuh, U, Ibrahim, A, Kisand, V
, Kjær, KH, Lammers, Y, Littlefair, J, Messager, E, Monchamp, M-E, Olajos, F, Orsi, W
, Pedersen, MW, Rijal, DP, Rydberg, J, Spanbauer, T, Stoof-Leichsenring, KR, Taberlet, P, Talas, L, Thomas, C, Walsh, DA
, Wang, Y, Willerslev, E, van Woerkom, A, Zimmermann, HH, Coolen, MJL, Epp, LS, Domaizon, I, Alsos, IG & Parducci, L 2021, '
Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations',
Quaternary, vol. 4, no. 1, 6.
https://doi.org/10.3390/quat4010006APA
Capo, E., Giguet-Covex, C.
, Rouillard, A., Nota, K., Heintzman, P. D., Vuillemin, A., Ariztegui, D., Arnaud, F., Belle, S., Bertilsson, S., Bigler, C., Bindler, R., Brown, A. G., Clarke, C. L., Crump, S. E., Debroas, D., Englund, G., Ficetola, G. F., Garner, R. E., ... Parducci, L. (2021).
Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations.
Quaternary,
4(1), [6].
https://doi.org/10.3390/quat4010006Vancouver
Capo E, Giguet-Covex C
, Rouillard A, Nota K, Heintzman PD, Vuillemin A et al.
Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations.
Quaternary. 2021;4(1). 6.
https://doi.org/10.3390/quat4010006Author
Capo, Eric ; Giguet-Covex, Charline ; Rouillard, Alexandra ; Nota, Kevin ; Heintzman, Peter D. ; Vuillemin, Aurele ; Ariztegui, Daniel ; Arnaud, Fabien ; Belle, Simon ; Bertilsson, Stefan ; Bigler, Christian ; Bindler, Richard ; Brown, Antony G. ; Clarke, Charlotte L. ; Crump, Sarah E. ; Debroas, Didier ; Englund, Göran ; Ficetola, Gentile Francesco ; Garner, Rebecca E. ; Gauthier, Joanna ; Gregory-Eaves, Irene ; Heinecke, Liv ; Herzschuh, Ulrike ; Ibrahim, Anan ; Kisand, Veljo ; Kjær, Kurt H. ; Lammers, Youri ; Littlefair, Joanne ; Messager, Erwan ; Monchamp, Marie-Eve ; Olajos, Fredrik ; Orsi, William ; Pedersen, Mikkel W. ; Rijal, Dilli P. ; Rydberg, Johan ; Spanbauer, Trisha ; Stoof-Leichsenring, Kathleen R. ; Taberlet, Pierre ; Talas, Liisi ; Thomas, Camille ; Walsh, David A. ; Wang, Yucheng ; Willerslev, Eske ; van Woerkom, Anne ; Zimmermann, Heike H. ; Coolen, Marco J. L. ; Epp, Laura S. ; Domaizon, Isabelle ; Alsos, Inger G. ; Parducci, Laura. / Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity : Overview and Recommendations. In: Quaternary. 2021 ; Vol. 4, No. 1.
Bibtex
@article{7b08132085fb4e1d8df32a2838300928,
title = "Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations",
abstract = "The use of lake sedimentary DNA to track the long-term changes in both terrestrial and aquatic biota is a rapidly advancing field in paleoecological research. Although largely applied nowadays, knowledge gaps remain in this field and there is therefore still research to be conducted to ensure the reliability of the sedimentary DNA signal. Building on the most recent literature and seven original case studies, we synthesize the state-of-the-art analytical procedures for effective sampling, extraction, amplification, quantification and/or generation of DNA inventories from sedimentary ancient DNA (sedaDNA) via high-throughput sequencing technologies. We provide recommendations based on current knowledge and best practises.",
keywords = "sedimentary ancient DNA, sedimentary DNA, lake sediments, paleolimnology, paleoecology, paleogenetics, paleogenomics, metabarcoding, metagenomics, biodiversity",
author = "Eric Capo and Charline Giguet-Covex and Alexandra Rouillard and Kevin Nota and Heintzman, {Peter D.} and Aurele Vuillemin and Daniel Ariztegui and Fabien Arnaud and Simon Belle and Stefan Bertilsson and Christian Bigler and Richard Bindler and Brown, {Antony G.} and Clarke, {Charlotte L.} and Crump, {Sarah E.} and Didier Debroas and G{\"o}ran Englund and Ficetola, {Gentile Francesco} and Garner, {Rebecca E.} and Joanna Gauthier and Irene Gregory-Eaves and Liv Heinecke and Ulrike Herzschuh and Anan Ibrahim and Veljo Kisand and Kj{\ae}r, {Kurt H.} and Youri Lammers and Joanne Littlefair and Erwan Messager and Marie-Eve Monchamp and Fredrik Olajos and William Orsi and Pedersen, {Mikkel W.} and Rijal, {Dilli P.} and Johan Rydberg and Trisha Spanbauer and Stoof-Leichsenring, {Kathleen R.} and Pierre Taberlet and Liisi Talas and Camille Thomas and Walsh, {David A.} and Yucheng Wang and Eske Willerslev and {van Woerkom}, Anne and Zimmermann, {Heike H.} and Coolen, {Marco J. L.} and Epp, {Laura S.} and Isabelle Domaizon and Alsos, {Inger G.} and Laura Parducci",
year = "2021",
doi = "10.3390/quat4010006",
language = "English",
volume = "4",
journal = "Quaternary",
issn = "2571-550X",
publisher = "MDPI",
number = "1",
}
RIS
TY - JOUR
T1 - Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity
T2 - Overview and Recommendations
AU - Capo, Eric
AU - Giguet-Covex, Charline
AU - Rouillard, Alexandra
AU - Nota, Kevin
AU - Heintzman, Peter D.
AU - Vuillemin, Aurele
AU - Ariztegui, Daniel
AU - Arnaud, Fabien
AU - Belle, Simon
AU - Bertilsson, Stefan
AU - Bigler, Christian
AU - Bindler, Richard
AU - Brown, Antony G.
AU - Clarke, Charlotte L.
AU - Crump, Sarah E.
AU - Debroas, Didier
AU - Englund, Göran
AU - Ficetola, Gentile Francesco
AU - Garner, Rebecca E.
AU - Gauthier, Joanna
AU - Gregory-Eaves, Irene
AU - Heinecke, Liv
AU - Herzschuh, Ulrike
AU - Ibrahim, Anan
AU - Kisand, Veljo
AU - Kjær, Kurt H.
AU - Lammers, Youri
AU - Littlefair, Joanne
AU - Messager, Erwan
AU - Monchamp, Marie-Eve
AU - Olajos, Fredrik
AU - Orsi, William
AU - Pedersen, Mikkel W.
AU - Rijal, Dilli P.
AU - Rydberg, Johan
AU - Spanbauer, Trisha
AU - Stoof-Leichsenring, Kathleen R.
AU - Taberlet, Pierre
AU - Talas, Liisi
AU - Thomas, Camille
AU - Walsh, David A.
AU - Wang, Yucheng
AU - Willerslev, Eske
AU - van Woerkom, Anne
AU - Zimmermann, Heike H.
AU - Coolen, Marco J. L.
AU - Epp, Laura S.
AU - Domaizon, Isabelle
AU - Alsos, Inger G.
AU - Parducci, Laura
PY - 2021
Y1 - 2021
N2 - The use of lake sedimentary DNA to track the long-term changes in both terrestrial and aquatic biota is a rapidly advancing field in paleoecological research. Although largely applied nowadays, knowledge gaps remain in this field and there is therefore still research to be conducted to ensure the reliability of the sedimentary DNA signal. Building on the most recent literature and seven original case studies, we synthesize the state-of-the-art analytical procedures for effective sampling, extraction, amplification, quantification and/or generation of DNA inventories from sedimentary ancient DNA (sedaDNA) via high-throughput sequencing technologies. We provide recommendations based on current knowledge and best practises.
AB - The use of lake sedimentary DNA to track the long-term changes in both terrestrial and aquatic biota is a rapidly advancing field in paleoecological research. Although largely applied nowadays, knowledge gaps remain in this field and there is therefore still research to be conducted to ensure the reliability of the sedimentary DNA signal. Building on the most recent literature and seven original case studies, we synthesize the state-of-the-art analytical procedures for effective sampling, extraction, amplification, quantification and/or generation of DNA inventories from sedimentary ancient DNA (sedaDNA) via high-throughput sequencing technologies. We provide recommendations based on current knowledge and best practises.
KW - sedimentary ancient DNA
KW - sedimentary DNA
KW - lake sediments
KW - paleolimnology
KW - paleoecology
KW - paleogenetics
KW - paleogenomics
KW - metabarcoding
KW - metagenomics
KW - biodiversity
U2 - 10.3390/quat4010006
DO - 10.3390/quat4010006
M3 - Review
VL - 4
JO - Quaternary
JF - Quaternary
SN - 2571-550X
IS - 1
M1 - 6
ER -
