Transition1x: a dataset for building generalizable reactive machine learning potentials

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningfagfællebedømt

Dokumenter

  • Fulltext

    Forlagets udgivne version, 43,4 MB, PDF-dokument

  • Mathias Schreiner
  • Arghya Bhowmik
  • Tejs Vegge
  • Jonas Busk
  • Winther, Ole
Machine Learning (ML) models have, in contrast to their usefulness in molecular dynamics studies, had limited success as surrogate potentials for reaction barrier search. This is primarily because available datasets for training ML models on small molecular systems almost exclusively contain configurations at or near equilibrium. In this work, we present the dataset Transition1x containing 9.6 million Density Functional Theory (DFT) calculations of forces and energies of molecular configurations on and around reaction pathways at the ωB97x/6–31 G(d) level of theory. The data was generated by running Nudged Elastic Band (NEB) with DFT on 10k organic reactions of various types while saving intermediate calculations. We train equivariant graph message-passing neural network models on Transition1x and cross-validate on the popular ANI1x and QM9 datasets. We show that ML models cannot learn features in transition state regions solely by training on hitherto popular benchmark datasets. Transition1x is a new challenging benchmark that will provide an important step towards developing next-generation ML force fields that also work far away from equilibrium configurations and reactive systems.
OriginalsprogEngelsk
Artikelnummer779
TidsskriftScientific Data
Vol/bind9
Udgave nummer1
Antal sider9
ISSN2052-4463
DOI
StatusUdgivet - 2022

Bibliografisk note

Funding Information:
The authors acknowledge support from the Novo Nordisk Foundation (SURE, NNF19OC0057822) and the European Union’s Horizon 2020 research and innovation program under Grant Agreement No. 957189 (BIG-MAP) and No. 957213 (BATTERY2030PLUS). Ole Winther also receives support from Novo Nordisk Foundation through the Center for Basic Machine Learning Research in Life Science (NNF20OC0062606) and the Pioneer Centre for AI, DNRF grant number P1.

Publisher Copyright:
© 2022, The Author(s).

ID: 330884489