The evolutionary history of extinct and living lions

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The evolutionary history of extinct and living lions. / de Manuel, Marc; Barnett, Ross; Sandoval-Velasco, Marcela; Yamaguchi, Nobuyuki; Vieira, Filipe Garrett; Mendoza, M. Lisandra Zepeda; Liu, Shiping; Martin, Michael D.; Sinding, Mikkel-Holger S.; Mak, Sarah S. T.; Caroe, Christian; Liu, Shanlin; Guo, Chunxue; Zheng, Jiao; Zazula, Grant; Baryshnikov, Gennady; Eizirik, Eduardo; Koepfli, Klaus-Peter; Johnson, Warren E.; Antunes, Agostinho; Sicheritz-Ponten, Thomas; Gopalakrishnan, Shyam; Larson, Greger; Yang, Huanming; O'Brien, Stephen J.; Hansen, Anders J.; Zhang, Guojie; Marques-Bonet, Tomas; Gilbert, M. Thomas P.

I: Proceedings of the National Academy of Sciences of the United States of America, Bind 117, Nr. 20, 2020, s. 10927-10934.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Harvard

de Manuel, M, Barnett, R, Sandoval-Velasco, M, Yamaguchi, N, Vieira, FG, Mendoza, MLZ, Liu, S, Martin, MD, Sinding, M-HS, Mak, SST, Caroe, C, Liu, S, Guo, C, Zheng, J, Zazula, G, Baryshnikov, G, Eizirik, E, Koepfli, K-P, Johnson, WE, Antunes, A, Sicheritz-Ponten, T, Gopalakrishnan, S, Larson, G, Yang, H, O'Brien, SJ, Hansen, AJ, Zhang, G, Marques-Bonet, T & Gilbert, MTP 2020, 'The evolutionary history of extinct and living lions', Proceedings of the National Academy of Sciences of the United States of America, bind 117, nr. 20, s. 10927-10934. https://doi.org/10.1073/pnas.1919423117

APA

de Manuel, M., Barnett, R., Sandoval-Velasco, M., Yamaguchi, N., Vieira, F. G., Mendoza, M. L. Z., Liu, S., Martin, M. D., Sinding, M-H. S., Mak, S. S. T., Caroe, C., Liu, S., Guo, C., Zheng, J., Zazula, G., Baryshnikov, G., Eizirik, E., Koepfli, K-P., Johnson, W. E., ... Gilbert, M. T. P. (2020). The evolutionary history of extinct and living lions. Proceedings of the National Academy of Sciences of the United States of America, 117(20), 10927-10934. https://doi.org/10.1073/pnas.1919423117

Vancouver

de Manuel M, Barnett R, Sandoval-Velasco M, Yamaguchi N, Vieira FG, Mendoza MLZ o.a. The evolutionary history of extinct and living lions. Proceedings of the National Academy of Sciences of the United States of America. 2020;117(20):10927-10934. https://doi.org/10.1073/pnas.1919423117

Author

de Manuel, Marc ; Barnett, Ross ; Sandoval-Velasco, Marcela ; Yamaguchi, Nobuyuki ; Vieira, Filipe Garrett ; Mendoza, M. Lisandra Zepeda ; Liu, Shiping ; Martin, Michael D. ; Sinding, Mikkel-Holger S. ; Mak, Sarah S. T. ; Caroe, Christian ; Liu, Shanlin ; Guo, Chunxue ; Zheng, Jiao ; Zazula, Grant ; Baryshnikov, Gennady ; Eizirik, Eduardo ; Koepfli, Klaus-Peter ; Johnson, Warren E. ; Antunes, Agostinho ; Sicheritz-Ponten, Thomas ; Gopalakrishnan, Shyam ; Larson, Greger ; Yang, Huanming ; O'Brien, Stephen J. ; Hansen, Anders J. ; Zhang, Guojie ; Marques-Bonet, Tomas ; Gilbert, M. Thomas P. / The evolutionary history of extinct and living lions. I: Proceedings of the National Academy of Sciences of the United States of America. 2020 ; Bind 117, Nr. 20. s. 10927-10934.

Bibtex

@article{f95a8fa8707b4345bcc5ade5ae7afc31,
title = "The evolutionary history of extinct and living lions",
abstract = "Lions are one of the world's most iconic megafauna, yet little is known about their temporal and spatial demographic history and population differentiation. We analyzed a genomic dataset of 20 specimens: two ca. 30,000-y-old cave lions (Panthera leo spelaea), 12 historic lions (Panthera leo leolPanthera leo melanochaita) that lived between the 15th and 20th centuries outside the current geographic distribution of lions, and 6 present-day lions from Africa and India. We found that cave and modern lions shared an ancestor ca. 500,000 y ago and that the 2 lineages likely did not hybridize following their divergence. Within modern lions, we found 2 main lineages that diverged ca. 70,000 y ago, with clear evidence of subsequent gene flow. Our data also reveal a nearly complete absence of genetic diversity within Indian lions, probably due to well-documented extremely low effective population sizes in the recent past. Our results contribute toward the understanding of the evolutionary history of lions and complement conservation efforts to protect the diversity of this vulnerable species.",
keywords = "lion, genomics, evolution, PANTHERA-LEO, POPULATION HISTORY, GENETIC DIVERSITY, ANCIENT DNA, AFRICAN, CONSERVATION, PHYLOGEOGRAPHY, ORIGIN",
author = "{de Manuel}, Marc and Ross Barnett and Marcela Sandoval-Velasco and Nobuyuki Yamaguchi and Vieira, {Filipe Garrett} and Mendoza, {M. Lisandra Zepeda} and Shiping Liu and Martin, {Michael D.} and Sinding, {Mikkel-Holger S.} and Mak, {Sarah S. T.} and Christian Caroe and Shanlin Liu and Chunxue Guo and Jiao Zheng and Grant Zazula and Gennady Baryshnikov and Eduardo Eizirik and Klaus-Peter Koepfli and Johnson, {Warren E.} and Agostinho Antunes and Thomas Sicheritz-Ponten and Shyam Gopalakrishnan and Greger Larson and Huanming Yang and O'Brien, {Stephen J.} and Hansen, {Anders J.} and Guojie Zhang and Tomas Marques-Bonet and Gilbert, {M. Thomas P.}",
year = "2020",
doi = "10.1073/pnas.1919423117",
language = "English",
volume = "117",
pages = "10927--10934",
journal = "Proceedings of the National Academy of Sciences of the United States of America",
issn = "0027-8424",
publisher = "The National Academy of Sciences of the United States of America",
number = "20",

}

RIS

TY - JOUR

T1 - The evolutionary history of extinct and living lions

AU - de Manuel, Marc

AU - Barnett, Ross

AU - Sandoval-Velasco, Marcela

AU - Yamaguchi, Nobuyuki

AU - Vieira, Filipe Garrett

AU - Mendoza, M. Lisandra Zepeda

AU - Liu, Shiping

AU - Martin, Michael D.

AU - Sinding, Mikkel-Holger S.

AU - Mak, Sarah S. T.

AU - Caroe, Christian

AU - Liu, Shanlin

AU - Guo, Chunxue

AU - Zheng, Jiao

AU - Zazula, Grant

AU - Baryshnikov, Gennady

AU - Eizirik, Eduardo

AU - Koepfli, Klaus-Peter

AU - Johnson, Warren E.

AU - Antunes, Agostinho

AU - Sicheritz-Ponten, Thomas

AU - Gopalakrishnan, Shyam

AU - Larson, Greger

AU - Yang, Huanming

AU - O'Brien, Stephen J.

AU - Hansen, Anders J.

AU - Zhang, Guojie

AU - Marques-Bonet, Tomas

AU - Gilbert, M. Thomas P.

PY - 2020

Y1 - 2020

N2 - Lions are one of the world's most iconic megafauna, yet little is known about their temporal and spatial demographic history and population differentiation. We analyzed a genomic dataset of 20 specimens: two ca. 30,000-y-old cave lions (Panthera leo spelaea), 12 historic lions (Panthera leo leolPanthera leo melanochaita) that lived between the 15th and 20th centuries outside the current geographic distribution of lions, and 6 present-day lions from Africa and India. We found that cave and modern lions shared an ancestor ca. 500,000 y ago and that the 2 lineages likely did not hybridize following their divergence. Within modern lions, we found 2 main lineages that diverged ca. 70,000 y ago, with clear evidence of subsequent gene flow. Our data also reveal a nearly complete absence of genetic diversity within Indian lions, probably due to well-documented extremely low effective population sizes in the recent past. Our results contribute toward the understanding of the evolutionary history of lions and complement conservation efforts to protect the diversity of this vulnerable species.

AB - Lions are one of the world's most iconic megafauna, yet little is known about their temporal and spatial demographic history and population differentiation. We analyzed a genomic dataset of 20 specimens: two ca. 30,000-y-old cave lions (Panthera leo spelaea), 12 historic lions (Panthera leo leolPanthera leo melanochaita) that lived between the 15th and 20th centuries outside the current geographic distribution of lions, and 6 present-day lions from Africa and India. We found that cave and modern lions shared an ancestor ca. 500,000 y ago and that the 2 lineages likely did not hybridize following their divergence. Within modern lions, we found 2 main lineages that diverged ca. 70,000 y ago, with clear evidence of subsequent gene flow. Our data also reveal a nearly complete absence of genetic diversity within Indian lions, probably due to well-documented extremely low effective population sizes in the recent past. Our results contribute toward the understanding of the evolutionary history of lions and complement conservation efforts to protect the diversity of this vulnerable species.

KW - lion

KW - genomics

KW - evolution

KW - PANTHERA-LEO

KW - POPULATION HISTORY

KW - GENETIC DIVERSITY

KW - ANCIENT DNA

KW - AFRICAN

KW - CONSERVATION

KW - PHYLOGEOGRAPHY

KW - ORIGIN

U2 - 10.1073/pnas.1919423117

DO - 10.1073/pnas.1919423117

M3 - Journal article

C2 - 32366643

VL - 117

SP - 10927

EP - 10934

JO - Proceedings of the National Academy of Sciences of the United States of America

JF - Proceedings of the National Academy of Sciences of the United States of America

SN - 0027-8424

IS - 20

ER -

ID: 247076171