Standards recommendations for the Earth BioGenome Project

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  • Mara K. N. Lawniczak
  • Richard Durbin
  • Paul Flicek
  • Kerstin Lindblad-Toh
  • Xiaofeng Wei
  • John M. Archibald
  • William J. Baker
  • Katherine Belov
  • Mark L. Blaxter
  • Tomas Marques Bonet
  • Anna K. Childers
  • Jonathan A. Coddington
  • Keith A. Crandall
  • Andrew J. Crawford
  • Robert P. Davey
  • Federica Di Palma
  • Qi Fang
  • Wilfried Haerty
  • Neil Hall
  • Katharina J. Hoff
  • Kerstin Howe
  • Erich D. Jarvis
  • Warren E. Johnson
  • Rebecca N. Johnson
  • Paul J. Kersey
  • Xin Liu
  • Jose Victor Lopez
  • Eugene W. Myers
  • Olga Vinnere Pettersson
  • Adam M. Phillippy
  • Monica F. Poelchau
  • Kim D. Pruitt
  • Arang Rhie
  • Juan Carlos Castilla-Rubio
  • Sunil Kumar Sahu
  • Nicholas A. Salmon
  • Pamela S. Soltis
  • David Swarbreck
  • Françoise Thibaud-Nissen
  • Sibo Wang
  • Jill L. Wegrzyn
  • He Zhang
  • Harris A. Lewin
  • Stephen Richards

A global international initiative, such as the Earth BioGenome Project (EBP), requires both agreement and coordination on standards to ensure that the collective effort generates rapid progress toward its goals. To this end, the EBP initiated five technical standards committees comprising volunteer members from the global genomics scientific community: Sample Collection and Processing, Sequencing and Assembly, Annotation, Analysis, and IT and Informatics. The current versions of the resulting standards documents are available on the EBP website, with the recognition that opportunities, technologies, and challenges may improve or change in the future, requiring flexibility for the EBP to meet its goals. Here, we describe some highlights from the proposed standards, and areas where additional challenges will need to be met.

OriginalsprogEngelsk
Artikelnummere2115639118
TidsskriftPNAS
Vol/bind119
Udgave nummer4
Antal sider8
ISSN0027-8424
DOI
StatusUdgivet - 2022

Bibliografisk note

Funding Information:
DBI:IIBR:CAREER #1943371. This work was supported in part by the US Department of Agriculture, Agricultural Research Service. Mention of trade names or commercial products in this publication is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the US Department of Agriculture. The US Department of Agriculture is an equal opportunity provider and employer.

Funding Information:
The work of K.D.P. and F.T.-N. was supported by the Intramural Research Program of the National Library of Medicine, NIH. K.L.-T. is a distinguished professor funded by the Swedish Research Council. J.A.C. is supported by the Global Genome Initiative of the National Museum of Natural History, Smithsonian Institution. E.D.J. is supported by the Howard Hughes Medical Institute (HHMI). P.F. is supported by Wellcome Grant WT108749/Z/15/Z and the European Molecular Biology Laboratory. J.L.W. is supported by National Science Foundation Grant

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© 2022 National Academy of Sciences. All rights reserved.

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