RNAcentral 2021: Secondary structure integration, improved sequence search and new member databases

Publikation: Bidrag til tidsskriftTidsskriftartikelForskningfagfællebedømt

  • Blake A. Sweeney
  • Anton I. Petrov
  • Carlos E. Ribas
  • Robert D. Finn
  • Alex Bateman
  • MacIej Szymanski
  • Wojciech M. Karlowski
  • Jamie J. Cannone
  • Robin R. Gutell
  • Simon Kay
  • Steven Marygold
  • Gil Dos Santos
  • Adam Frankish
  • Jonathan M. Mudge
  • Ruth Barshir
  • Simon Fishilevich
  • Patricia P. Chan
  • Todd M. Lowe
  • Ruth Seal
  • Elspeth Bruford
  • Simona Panni
  • Pablo Porras
  • Dimitra Karagkouni
  • Artemis G. Hatzigeorgiou
  • Lina Ma
  • Zhang Zhang
  • Pieter Jan Volders
  • Pieter Mestdagh
  • Sam Griffiths-Jones
  • Bastian Fromm
  • Kevin J. Peterson
  • Ioanna Kalvari
  • Eric P. Nawrocki
  • Anton S. Petrov
  • Shuai Weng
  • Philia Bouchard-Bourelle
  • Michelle Scott
  • Lauren M. Lui
  • David Hoksza
  • Ruth C. Lovering
  • Barbara Kramarz
  • Prita Mani
  • Sridhar Ramachandran
  • Zasha Weinberg

RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences that provides a single access point to 44 RNA resources and >18 million ncRNA sequences from a wide range of organisms and RNA types. RNAcentral now also includes secondary (2D) structure information for >13 million sequences, making RNAcentral the world's largest RNA 2D structure database. The 2D diagrams are displayed using R2DT, a new 2D structure visualization method that uses consistent, reproducible and recognizable layouts for related RNAs. The sequence similarity search has been updated with a faster interface featuring facets for filtering search results by RNA type, organism, source database or any keyword. This sequence search tool is available as a reusable web component, and has been integrated into several RNAcentral member databases, including Rfam, miRBase and snoDB. To allow for a more fine-grained assignment of RNA types and subtypes, all RNAcentral sequences have been annotated with Sequence Ontology terms. The RNAcentral database continues to grow and provide a central data resource for the RNA community. RNAcentral is freely available at https://rnacentral.org.

OriginalsprogEngelsk
TidsskriftNucleic Acids Research
Vol/bind49
Udgave nummerD1
Sider (fra-til)D212-D220
ISSN0305-1048
DOI
StatusUdgivet - 2021

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