Computational and Functional Analysis of Structural Features in the ZAKα Kinase
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Computational and Functional Analysis of Structural Features in the ZAKα Kinase. / Johansen, Valdemar Brimnes Ingemann; Snieckute, Goda; Vind, Anna Constance; Blasius, Melanie; Bekker-Jensen, Simon.
I: Cells, Bind 12, Nr. 6, 969, 2023.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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TY - JOUR
T1 - Computational and Functional Analysis of Structural Features in the ZAKα Kinase
AU - Johansen, Valdemar Brimnes Ingemann
AU - Snieckute, Goda
AU - Vind, Anna Constance
AU - Blasius, Melanie
AU - Bekker-Jensen, Simon
PY - 2023
Y1 - 2023
N2 - The kinase ZAKα acts as the proximal sensor of translational impairment and ribotoxic stress, which results in the activation of the MAP kinases p38 and JNK. Despite recent insights into the functions and binding partners of individual protein domains in ZAKα, the mechanisms by which ZAKα binds ribosomes and becomes activated have remained elusive. Here, we highlight a short, thrice-repeated, and positively charged peptide motif as critical for the ribotoxic stress-sensing function of the Sensor (S) domain of ZAKα. We use this insight to demonstrate that the mutation of the SAM domain uncouples ZAKα activity from ribosome binding. Finally, we use 3D structural comparison to identify and functionally characterize an additional folded domain in ZAKα with structural homology to YEATS domains. These insights allow us to formulate a model for ribosome-templated ZAKα activation based on the re-organization of interactions between modular protein domains. In sum, our work both advances our understanding of the protein domains and 3D architecture of the ZAKα kinase and furthers our understanding of how the ribotoxic stress response is activated.
AB - The kinase ZAKα acts as the proximal sensor of translational impairment and ribotoxic stress, which results in the activation of the MAP kinases p38 and JNK. Despite recent insights into the functions and binding partners of individual protein domains in ZAKα, the mechanisms by which ZAKα binds ribosomes and becomes activated have remained elusive. Here, we highlight a short, thrice-repeated, and positively charged peptide motif as critical for the ribotoxic stress-sensing function of the Sensor (S) domain of ZAKα. We use this insight to demonstrate that the mutation of the SAM domain uncouples ZAKα activity from ribosome binding. Finally, we use 3D structural comparison to identify and functionally characterize an additional folded domain in ZAKα with structural homology to YEATS domains. These insights allow us to formulate a model for ribosome-templated ZAKα activation based on the re-organization of interactions between modular protein domains. In sum, our work both advances our understanding of the protein domains and 3D architecture of the ZAKα kinase and furthers our understanding of how the ribotoxic stress response is activated.
KW - JNK
KW - p38
KW - ribosomes
KW - ribotoxic stress response
KW - translation
KW - YEATS domain
KW - ZAKα
U2 - 10.3390/cells12060969
DO - 10.3390/cells12060969
M3 - Journal article
C2 - 36980309
AN - SCOPUS:85151108861
VL - 12
JO - Cells
JF - Cells
SN - 2073-4409
IS - 6
M1 - 969
ER -
ID: 342093992