A Structural Framework for GPCR Chemogenomics: What’s In a Residue Number?

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Standard

A Structural Framework for GPCR Chemogenomics : What’s In a Residue Number? / Vass, Márton; Kooistra, Albert J.; Verhoeven, Stefan; Gloriam, David; de Esch, Iwan J.P.; de Graaf, Chris.

Methods in Molecular Biology. Humana Press, 2018. s. 73-113 (Methods in Molecular Biology, Bind 1705).

Publikation: Bidrag til bog/antologi/rapport › Bidrag til bog/antologi › Forskning › fagfællebedømt

Harvard

Vass, M, Kooistra, AJ, Verhoeven, S, Gloriam, D, de Esch, IJP & de Graaf, C 2018, A Structural Framework for GPCR Chemogenomics: What’s In a Residue Number? i Methods in Molecular Biology. Humana Press, Methods in Molecular Biology, bind 1705, s. 73-113. https://doi.org/10.1007/978-1-4939-7465-8_4

APA

Vass, M., Kooistra, A. J., Verhoeven, S., Gloriam, D., de Esch, I. J. P., & de Graaf, C. (2018). A Structural Framework for GPCR Chemogenomics: What’s In a Residue Number? I Methods in Molecular Biology (s. 73-113). Humana Press. Methods in Molecular Biology Bind 1705 https://doi.org/10.1007/978-1-4939-7465-8_4

Vancouver

Vass M, Kooistra AJ, Verhoeven S, Gloriam D, de Esch IJP, de Graaf C. A Structural Framework for GPCR Chemogenomics: What’s In a Residue Number? I Methods in Molecular Biology. Humana Press. 2018. s. 73-113. (Methods in Molecular Biology, Bind 1705). https://doi.org/10.1007/978-1-4939-7465-8_4

Author

Vass, Márton ; Kooistra, Albert J. ; Verhoeven, Stefan ; Gloriam, David ; de Esch, Iwan J.P. ; de Graaf, Chris. / A Structural Framework for GPCR Chemogenomics : What’s In a Residue Number?. Methods in Molecular Biology. Humana Press, 2018. s. 73-113 (Methods in Molecular Biology, Bind 1705).

Bibtex

@inbook{0ab9167f086d4211b4dfe5359e0f1a18,
title = "A Structural Framework for GPCR Chemogenomics: What{\textquoteright}s In a Residue Number?",
abstract = "The recent surge of crystal structures of G protein-coupled receptors (GPCRs), as well as comprehensive collections of sequence, structural, ligand bioactivity, and mutation data, has enabled the development of integrated chemogenomics workflows for this important target family. This chapter will focus on cross-family and cross-class studies of GPCRs that have pinpointed the need for, and the implementation of, a generic numbering scheme for referring to specific structural elements of GPCRs. Sequence- and structure-based numbering schemes for different receptor classes will be introduced and the remaining caveats will be discussed. The use of these numbering schemes has facilitated many chemogenomics studies such as consensus binding site definition, binding site comparison, ligand repurposing (e.g. for orphan receptors), sequence-based pharmacophore generation for homology modeling or virtual screening, and class-wide chemogenomics studies of GPCRs.",
keywords = "Chemogenomics, Crystal structures, Drug discovery, G protein-coupled receptors, GPCRs, Ligand repurposing, Mutations, Numbering schemes",
author = "M{\'a}rton Vass and Kooistra, {Albert J.} and Stefan Verhoeven and David Gloriam and {de Esch}, {Iwan J.P.} and {de Graaf}, Chris",
year = "2018",
month = jan,
day = "1",
doi = "10.1007/978-1-4939-7465-8_4",
language = "English",
series = "Methods in Molecular Biology",
publisher = "Humana Press",
pages = "73--113",
booktitle = "Methods in Molecular Biology",
address = "United States",

}

RIS

TY - CHAP

T1 - A Structural Framework for GPCR Chemogenomics

T2 - What’s In a Residue Number?

AU - Vass, Márton

AU - Kooistra, Albert J.

AU - Verhoeven, Stefan

AU - Gloriam, David

AU - de Esch, Iwan J.P.

AU - de Graaf, Chris

PY - 2018/1/1

Y1 - 2018/1/1

N2 - The recent surge of crystal structures of G protein-coupled receptors (GPCRs), as well as comprehensive collections of sequence, structural, ligand bioactivity, and mutation data, has enabled the development of integrated chemogenomics workflows for this important target family. This chapter will focus on cross-family and cross-class studies of GPCRs that have pinpointed the need for, and the implementation of, a generic numbering scheme for referring to specific structural elements of GPCRs. Sequence- and structure-based numbering schemes for different receptor classes will be introduced and the remaining caveats will be discussed. The use of these numbering schemes has facilitated many chemogenomics studies such as consensus binding site definition, binding site comparison, ligand repurposing (e.g. for orphan receptors), sequence-based pharmacophore generation for homology modeling or virtual screening, and class-wide chemogenomics studies of GPCRs.

AB - The recent surge of crystal structures of G protein-coupled receptors (GPCRs), as well as comprehensive collections of sequence, structural, ligand bioactivity, and mutation data, has enabled the development of integrated chemogenomics workflows for this important target family. This chapter will focus on cross-family and cross-class studies of GPCRs that have pinpointed the need for, and the implementation of, a generic numbering scheme for referring to specific structural elements of GPCRs. Sequence- and structure-based numbering schemes for different receptor classes will be introduced and the remaining caveats will be discussed. The use of these numbering schemes has facilitated many chemogenomics studies such as consensus binding site definition, binding site comparison, ligand repurposing (e.g. for orphan receptors), sequence-based pharmacophore generation for homology modeling or virtual screening, and class-wide chemogenomics studies of GPCRs.

KW - Chemogenomics

KW - Crystal structures

KW - Drug discovery

KW - G protein-coupled receptors

KW - GPCRs

KW - Ligand repurposing

KW - Mutations

KW - Numbering schemes

U2 - 10.1007/978-1-4939-7465-8_4

DO - 10.1007/978-1-4939-7465-8_4

M3 - Book chapter

C2 - 29188559

AN - SCOPUS:85036631521

T3 - Methods in Molecular Biology

SP - 73

EP - 113

BT - Methods in Molecular Biology

PB - Humana Press

ER -

ID: 199351651