Neoantigen-reactive CD8+ T cells affect clinical outcome of adoptive cell therapy with tumor-infiltrating lymphocytes in melanoma

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  • Nikolaj Pagh Kristensen
  • Christina Heeke
  • Siri A. Tvingsholm
  • Annie Borch
  • Arianna Draghi
  • Michael D. Crowther
  • Ibel Carri
  • Kamilla K. Munk
  • Jeppe Sejerø Holm
  • Anne Mette Bjerregaard
  • Amalie Kai Bentzen
  • Andrea M. Marquard
  • Zoltan Szallasi
  • Nicholas McGranahan
  • Rikke Andersen
  • Morten Nielsen
  • Göran B. Jönsson
  • dqp123, dqp123
  • Svane, Inge Marie
  • Sine Reker Hadrup

BACKGROUND. Neoantigen-driven recognition and T cell–mediated killing contribute to tumor clearance following adoptive cell therapy (ACT) with tumor-infiltrating lymphocytes (TILs). Yet how diversity, frequency, and persistence of expanded neoepitope-specific CD8+ T cells derived from TIL infusion products affect patient outcome is not fully determined. METHODS. Using barcoded pMHC multimers, we provide a comprehensive mapping of CD8+ T cells recognizing neoepitopes in TIL infusion products and blood samples from 26 metastatic melanoma patients who received ACT. RESULTS. We identified 106 neoepitopes within TIL infusion products corresponding to 1.8% of all predicted neoepitopes. We observed neoepitope-specific recognition to be virtually devoid in TIL infusion products given to patients with progressive disease outcome. Moreover, we found that the frequency of neoepitope-specific CD8+ T cells in TIL infusion products correlated with increased survival and that neoepitope-specific CD8+ T cells shared with the infusion product in posttreatment blood samples were unique to responders of TIL-ACT. Finally, we found that a transcriptional signature for lymphocyte activity within the tumor microenvironment was associated with a higher frequency of neoepitope-specific CD8+ T cells in the infusion product. CONCLUSIONS. These data support previous case studies of neoepitope-specific CD8+ T cells in melanoma and indicate that successful TIL-ACT is associated with an expansion of neoepitope-specific CD8+ T cells. FUNDING. NEYE Foundation; European Research Council; Lundbeck Foundation Fellowship; Carlsberg Foundation.

OriginalsprogEngelsk
Artikelnummer150535
TidsskriftJournal of Clinical Investigation
Vol/bind132
Udgave nummer2
Sider (fra-til)1-16
ISSN0021-9738
DOI
StatusUdgivet - 2022

Bibliografisk note

Funding Information:
FUNDING. NEYE Foundation; European Research Council; Lundbeck Foundation Fellowship; Carlsberg Foundation.

Funding Information:
We thank all donors and patients for participating in the study and B. Rotbøl, A.F. Løye, and A.D. Burkal for excellent technical assistance with handling flow cytometry instruments and blood samples. This research was funded primarily through the NEYE foundation grant “A personalized approach for increased clinical efficacy of cancer immunotherapy” and in part supported by the European Research Council, StG 677268 NextDART, Lundbeck Foundation Fellowship R190–2014–4178, and the Carlsberg Foundation.

Publisher Copyright:
Copyright: © 2022, Kristensen et al.

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