Junil Kim
Guest researcher
Won Group
Ole Maaløes Vej 5, 2200 København N.
- 2023
- Published
CellNeighborEX: deciphering neighbor-dependent gene expression from spatial transcriptomics data
Kim, H., Kumar, A., Lövkvist, Cecilia, Palma, A. M., Martin, Patrick Cédric Nathan, Kim, Junil, Bhoopathi, P., Trevino, J., Fisher, P., Madan, E., Gogna, R. & Won, K. J., 2023, In: Molecular Systems Biology. 19, 11, 18 p., e11670.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Neighbor-specific gene expression revealed from physically interacting cells during mouse embryonic development
Kim, Junil, Rothová, M. M., Madan, E., Rhee, S., Weng, Guangzheng, Palma, A. M., Liao, Linbu, David, E., Amit, I., Hajkarim, M. C., Vudatha, V., Gutiérrez-García, A., Moreno, E., Winn, R., Trevino, J., Fisher, P. B., Brickman, Joshua Mark, Gogna, R. & Won, K. J., 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 2, 10 p., e2205371120.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
A PDX1 cistrome and single-cell transcriptome resource of the developing pancreas
Yang, X., Raum, J. C., Kim, Junil, Yu, R., Yang, J., Rice, G., Li, C., Won, K., Stanescu, D. E. & Stoffers, D. A., 2022, In: Development. 149, 13, 8 p., 200432.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Neighbor-specific gene expression revealed from physically interacting cells during mouse embryonic development
Kim, Junil, Rothová, M. M., Liao, Linbu, Rhee, S., Weng, Guangzheng, David, E., Amit, I., Hajkarim, M. C., Brickman, Joshua Mark & Won, K. J., 2022, Cold Spring Harbor Laboratory, 26 p. (bioRxiv).Research output: Working paper › Preprint › Research
- Published
Systemic approaches using single cell transcriptome reveal that C/EBPγ regulates autophagy under amino acid starved condition
Kim, D., Kim, Junil, Yu, Y. S., Kim, Y. R., Baek, S. H. & Won, K. J., 2022, In: Nucleic Acids Research. 50, 13, p. 7298-7309 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Decreased KATPChannel Activity Contributes to the Low Glucose Threshold for Insulin Secretion of Rat Neonatal Islets
Yang, J., Hammoud, B., Li, C., Ridler, A., Yau, D., Kim, Junil, Won, K. J., Stanley, C. A., Hoshi, T. & Stanescu, D. E., 2021, In: Endocrinology. 162, 9, 14 p., bqab121.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
TENET: Gene network reconstruction using transfer entropy reveals key regulatory factors from single cell transcriptomic data
Kim, Junil, Jakobsen, S. T., Natarajan, K. N. & Won, K. J., 2021, In: Nucleic Acids Research. 49, 1, e1.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
VeTra: a tool for trajectory inference based on RNA velocity
Weng, Guangzheng, Kim, Junil & Won, K. J., 2021, In: Bioinformatics. 37, 20, p. 3509-3513 btab364.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
A Critical Role for Estrogen-Related Receptor Signaling in Cardiac Maturation
Sakamoto, T., Matsuura, T. R., Wan, S., Ryba, D. M., Kim, Junil, Won, K. J., Lai, L., Petucci, C., Petrenko, N., Musunuru, K., Vega, R. B. & Kelly, D. P., 2020, In: Circulation Research. 126, 12, p. 1685-1702Research output: Contribution to journal › Journal article › Research › peer-review
- Published
SHARP: hyperfast and accurate processing of single-cell RNA-seq data via ensemble random projection
Wan, S., Kim, Junil & Won, K. J., 2020, In: Genome Research. 30, 2, p. 205-213Research output: Contribution to journal › Journal article › Research › peer-review
ID: 196990335
Most downloads
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101
downloads
CellBIC: bimodality-based top-down clustering of single-cell RNA sequencing data reveals hierarchical structure of the cell type
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
64
downloads
SHARP: hyperfast and accurate processing of single-cell RNA-seq data via ensemble random projection
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
29
downloads
Neighbor-specific gene expression revealed from physically interacting cells during mouse embryonic development
Research output: Working paper › Preprint › Research
Published