SmashCommunity: A metagenomic annotation and analysis tool.
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SmashCommunity: A metagenomic annotation and analysis tool. / Arumugam, Manimozhiyan; Harrington, Eoghan D; Foerstner, Konrad U; Raes, Jeroen; Bork, Peer.
I: Bioinformatics, Bind 26, Nr. 23, 10.2010, s. 2977-2978.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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TY - JOUR
T1 - SmashCommunity: A metagenomic annotation and analysis tool.
AU - Arumugam, Manimozhiyan
AU - Harrington, Eoghan D
AU - Foerstner, Konrad U
AU - Raes, Jeroen
AU - Bork, Peer
PY - 2010/10
Y1 - 2010/10
N2 - SUMMARY: SmashCommunity is a stand-alone metagenomic annotation and analysis pipeline suitable for data from Sanger and 454 sequencing technologies. It supports state-of-the-art software for essential metagenomic tasks such as assembly and gene prediction. It provides tools to estimate the quantitative phylogenetic and functional compositions of metagenomes, to compare compositions of multiple metagenomes and to produce intuitive visual representations of such analyses. AVAILABILITY: SmashCommunity is freely available at http://www.bork.embl.de/software/smash CONTACT: bork@embl.de.
AB - SUMMARY: SmashCommunity is a stand-alone metagenomic annotation and analysis pipeline suitable for data from Sanger and 454 sequencing technologies. It supports state-of-the-art software for essential metagenomic tasks such as assembly and gene prediction. It provides tools to estimate the quantitative phylogenetic and functional compositions of metagenomes, to compare compositions of multiple metagenomes and to produce intuitive visual representations of such analyses. AVAILABILITY: SmashCommunity is freely available at http://www.bork.embl.de/software/smash CONTACT: bork@embl.de.
U2 - 10.1093/bioinformatics/btq536
DO - 10.1093/bioinformatics/btq536
M3 - Journal article
C2 - 20959381
VL - 26
SP - 2977
EP - 2978
JO - Computer Applications in the Biosciences
JF - Computer Applications in the Biosciences
SN - 1471-2105
IS - 23
ER -
ID: 43976240