TY - ABST

T1 - Marker-assisted selection on E. coli F4ab/ac resistance and the effect on neonatal survival in piglets

AU - Jørgensen, Claus Bøttcher

AU - Anderson, Susan I.

AU - Cirera, Susanna

AU - Archibald, Alan

AU - Raudsepp, Terje

AU - Chowdhary, Bhanu

AU - Edfors-Lilja, Inger

AU - Andersson, Leif

AU - Nielsen, Bjarne

AU - Johannsen, Maria N.

AU - Fredholm, Merete

N1 - In 1991, Claus B. Jorgensen obtained his MSc in Agricultural Sciences at The Royal Veterinary and Agricultural University (RVAU), Denmark. He was awarded his PhD in 1997 on research related to genome analysis in both cattle and pigs. The PhD study was carried out both at the BBSRC Babraham Institute, UK and at the Royal Veterinary and Agricultural University, Denmark. Claus B. Jorgensen held different post doc positions at RVAU between 1997 and 2003 and in 2003 he got a position as associate professor in genetics at RVAU. Claus B. Jorgensens research has focused on comparative mapping and linkage mapping primarily in pigs. He has been collaborator on the Sino-Danish Pig Genome project, which has generated around 700.000 ESTs and 3.000.000 genomic shot gun sequences. Recently, Claus B. Jorgensens research focus has been on susceptibility of ETEC F4ab/ac in pigs. Collaboration with the industry on application of genetic diagnostics in both cattle and pigs has also been an area of Claus B. Jorgensens interest. Sider: 1

PY - 2005

Y1 - 2005

N2 - Enterotoxigenic Escherichia coli (ETEC) that express the F4ab or F4ac fimbriae (formerly known as K88ab/ac) are major causes of diarrhea and death in neonatal and young pigs. A locus controlling susceptibility towards ETEC F4ab/ac has previously been mapped to pig chromosome 13q41. A number of studies indicate that candidate genes for this trait could either be transferrin-like-genes or mucin-like sialoglycoproteins. Deductions based on linkage and comparative mapping data point to mucin 4 (MUC4) as a likely candidate. Incidentally, the gene lies in one of the candidate regions on Hsap3 (viz., Hsap3q29). We isolated pig BAC clones containing MUC4, and mapped the BACs by FISH to SSC13q41. FISH mapping on interphase nuclei positioned MUC4 between microsatellite markers Sw207 and S0283 while radiation hybrid mapping positioned it between SST and SWR2189. Initial screening for polymorphism in the gene revealed a SNP in intron 7 that shows complete co-segregation with ETEC F4ab/ac susceptibility in a Wild boar/Large White intercross. We report on the genomic characterization of the porcine mucin 4 gene spanning 25 exons and more than 31 kb. Comparison between the porcine mucin 4 gene and the human ortholog shows conservation between 58% and 89% on the nucleotide level of the different exons. Highly conserved non-protein coding sequences are also evident from the comparison. Alignment between porcine and murine MUC4 shows less conservation than the pig-human comparison. In addition to the genomic sequence of pig mucin 4 we also report on more than 15 SNPs discovered in the porcine MUC4 sequence. Collaboration with the Danish Slaughterhouses on genotyping of the intron 7 SNP of Mucin 4 in 6.373 breeding boars (3.432 Landrace and 2.941 Large White) and analysis of their offspring has revealed data of relevance to neonatal survival. Analysis on offspring from 6.373 animals show a highly significant (P < 0.0001 for Landrace and P = 0.0003 for Large White) positive correlation between the R-allele and living piglets on day five after birth, whereas there is a negative correlation to meat content, but all in all the more R-alleles the better breeding value in the current Danish breeding scheme.

AB - Enterotoxigenic Escherichia coli (ETEC) that express the F4ab or F4ac fimbriae (formerly known as K88ab/ac) are major causes of diarrhea and death in neonatal and young pigs. A locus controlling susceptibility towards ETEC F4ab/ac has previously been mapped to pig chromosome 13q41. A number of studies indicate that candidate genes for this trait could either be transferrin-like-genes or mucin-like sialoglycoproteins. Deductions based on linkage and comparative mapping data point to mucin 4 (MUC4) as a likely candidate. Incidentally, the gene lies in one of the candidate regions on Hsap3 (viz., Hsap3q29). We isolated pig BAC clones containing MUC4, and mapped the BACs by FISH to SSC13q41. FISH mapping on interphase nuclei positioned MUC4 between microsatellite markers Sw207 and S0283 while radiation hybrid mapping positioned it between SST and SWR2189. Initial screening for polymorphism in the gene revealed a SNP in intron 7 that shows complete co-segregation with ETEC F4ab/ac susceptibility in a Wild boar/Large White intercross. We report on the genomic characterization of the porcine mucin 4 gene spanning 25 exons and more than 31 kb. Comparison between the porcine mucin 4 gene and the human ortholog shows conservation between 58% and 89% on the nucleotide level of the different exons. Highly conserved non-protein coding sequences are also evident from the comparison. Alignment between porcine and murine MUC4 shows less conservation than the pig-human comparison. In addition to the genomic sequence of pig mucin 4 we also report on more than 15 SNPs discovered in the porcine MUC4 sequence. Collaboration with the Danish Slaughterhouses on genotyping of the intron 7 SNP of Mucin 4 in 6.373 breeding boars (3.432 Landrace and 2.941 Large White) and analysis of their offspring has revealed data of relevance to neonatal survival. Analysis on offspring from 6.373 animals show a highly significant (P < 0.0001 for Landrace and P = 0.0003 for Large White) positive correlation between the R-allele and living piglets on day five after birth, whereas there is a negative correlation to meat content, but all in all the more R-alleles the better breeding value in the current Danish breeding scheme.

M3 - Conference abstract for conference

Y2 - 23 May 2005 through 23 May 2005

ER -