MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes
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MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes. / Zhang, Yanling; Zhang, Yong; Adachi, Jun; Olsen, Jesper Velgaard; Shi, Rong; de Souza, Gustavo; Pasini, Erica; Foster, Leonard J; Macek, Boris; Zougman, Alexandre; Kumar, Chanchal; Wisniewski, Jacek R; Jun, Wang; Mann, Matthias.
I: Nucleic Acids Research, Bind 35, Nr. Database issue, 01.2007, s. D771-9.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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T1 - MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes
AU - Zhang, Yanling
AU - Zhang, Yong
AU - Adachi, Jun
AU - Olsen, Jesper Velgaard
AU - Shi, Rong
AU - de Souza, Gustavo
AU - Pasini, Erica
AU - Foster, Leonard J
AU - Macek, Boris
AU - Zougman, Alexandre
AU - Kumar, Chanchal
AU - Wisniewski, Jacek R
AU - Jun, Wang
AU - Mann, Matthias
N1 - Keywords: Animals; Body Fluids; Cell Line; Databases, Protein; Erythrocytes; Humans; Internet; Liver; Mass Spectrometry; Mice; Organelles; Proteome; Proteomics; Reproducibility of Results; User-Computer Interface
PY - 2007/1
Y1 - 2007/1
N2 - Mass spectrometry (MS)-based proteomics has become a powerful technology to map the protein composition of organelles, cell types and tissues. In our department, a large-scale effort to map these proteomes is complemented by the Max-Planck Unified (MAPU) proteome database. MAPU contains several body fluid proteomes; including plasma, urine, and cerebrospinal fluid. Cell lines have been mapped to a depth of several thousand proteins and the red blood cell proteome has also been analyzed in depth. The liver proteome is represented with 3200 proteins. By employing high resolution MS and stringent validation criteria, false positive identification rates in MAPU are lower than 1:1000. Thus MAPU datasets can serve as reference proteomes in biomarker discovery. MAPU contains the peptides identifying each protein, measured masses, scores and intensities and is freely available at http://www.mapuproteome.com using a clickable interface of cell or body parts. Proteome data can be queried across proteomes by protein name, accession number, sequence similarity, peptide sequence and annotation information. More than 4500 mouse and 2500 human proteins have already been identified in at least one proteome. Basic annotation information and links to other public databases are provided in MAPU and we plan to add further analysis tools.
AB - Mass spectrometry (MS)-based proteomics has become a powerful technology to map the protein composition of organelles, cell types and tissues. In our department, a large-scale effort to map these proteomes is complemented by the Max-Planck Unified (MAPU) proteome database. MAPU contains several body fluid proteomes; including plasma, urine, and cerebrospinal fluid. Cell lines have been mapped to a depth of several thousand proteins and the red blood cell proteome has also been analyzed in depth. The liver proteome is represented with 3200 proteins. By employing high resolution MS and stringent validation criteria, false positive identification rates in MAPU are lower than 1:1000. Thus MAPU datasets can serve as reference proteomes in biomarker discovery. MAPU contains the peptides identifying each protein, measured masses, scores and intensities and is freely available at http://www.mapuproteome.com using a clickable interface of cell or body parts. Proteome data can be queried across proteomes by protein name, accession number, sequence similarity, peptide sequence and annotation information. More than 4500 mouse and 2500 human proteins have already been identified in at least one proteome. Basic annotation information and links to other public databases are provided in MAPU and we plan to add further analysis tools.
U2 - 10.1093/nar/gkl784
DO - 10.1093/nar/gkl784
M3 - Journal article
C2 - 17090601
VL - 35
SP - D771-9
JO - Nucleic Acids Research
JF - Nucleic Acids Research
SN - 0305-1048
IS - Database issue
ER -
ID: 46460148