Standard
Gateways to the FANTOM5 promoter level mammalian expression atlas. / Lizio, Marina; Harshbarger, Jayson; Shimoji, Hisashi; Severin, Jessica; Kasukawa, Takeya; Sahin, Serkan; Abugessaisa, Imad; Fukuda, Shiro; Hori, Fumi; Ishikawa-Kato, Sachi; Mungall, Christopher J; Arner, Erik; Baillie, J Kenneth; Bertin, Nicolas; Bono, Hidemasa; de Hoon, Michiel; Diehl, Alexander D; Dimont, Emmanuel; Freeman, Tom C; Fujieda, Kaori; Hide, Winston; Kaliyaperumal, Rajaram; Katayama, Toshiaki; Lassmann, Timo; Meehan, Terrence F; Nishikata, Koro; Ono, Hiromasa; Rehli, Michael; Sandelin, Albin Gustav; Schultes, Erik A; 't Hoen, Peter A C; Tatum, Zuotian; Thompson, Mark; Toyoda, Tetsuro; Wright, Derek W; Daub, Carsten O; Itoh, Masayoshi; Carninci, Piero; Hayashizaki, Yoshihide; Forrest, Alistair R R; Kawaji, Hideya.
In:
Genome Biology (Online Edition), Vol. 16, 22, 2015.
Research output: Contribution to journal › Journal article › Research › peer-review
Harvard
Lizio, M, Harshbarger, J, Shimoji, H, Severin, J, Kasukawa, T, Sahin, S, Abugessaisa, I, Fukuda, S, Hori, F, Ishikawa-Kato, S, Mungall, CJ, Arner, E, Baillie, JK, Bertin, N, Bono, H, de Hoon, M, Diehl, AD, Dimont, E, Freeman, TC, Fujieda, K, Hide, W, Kaliyaperumal, R, Katayama, T, Lassmann, T, Meehan, TF, Nishikata, K, Ono, H, Rehli, M
, Sandelin, AG, Schultes, EA, 't Hoen, PAC, Tatum, Z, Thompson, M, Toyoda, T, Wright, DW, Daub, CO, Itoh, M, Carninci, P, Hayashizaki, Y, Forrest, ARR & Kawaji, H 2015, '
Gateways to the FANTOM5 promoter level mammalian expression atlas',
Genome Biology (Online Edition), vol. 16, 22.
https://doi.org/10.1186/s13059-014-0560-6APA
Lizio, M., Harshbarger, J., Shimoji, H., Severin, J., Kasukawa, T., Sahin, S., Abugessaisa, I., Fukuda, S., Hori, F., Ishikawa-Kato, S., Mungall, C. J., Arner, E., Baillie, J. K., Bertin, N., Bono, H., de Hoon, M., Diehl, A. D., Dimont, E., Freeman, T. C., ... Kawaji, H. (2015).
Gateways to the FANTOM5 promoter level mammalian expression atlas.
Genome Biology (Online Edition),
16, [22].
https://doi.org/10.1186/s13059-014-0560-6Vancouver
Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S et al.
Gateways to the FANTOM5 promoter level mammalian expression atlas.
Genome Biology (Online Edition). 2015;16. 22.
https://doi.org/10.1186/s13059-014-0560-6Author
Lizio, Marina ; Harshbarger, Jayson ; Shimoji, Hisashi ; Severin, Jessica ; Kasukawa, Takeya ; Sahin, Serkan ; Abugessaisa, Imad ; Fukuda, Shiro ; Hori, Fumi ; Ishikawa-Kato, Sachi ; Mungall, Christopher J ; Arner, Erik ; Baillie, J Kenneth ; Bertin, Nicolas ; Bono, Hidemasa ; de Hoon, Michiel ; Diehl, Alexander D ; Dimont, Emmanuel ; Freeman, Tom C ; Fujieda, Kaori ; Hide, Winston ; Kaliyaperumal, Rajaram ; Katayama, Toshiaki ; Lassmann, Timo ; Meehan, Terrence F ; Nishikata, Koro ; Ono, Hiromasa ; Rehli, Michael ; Sandelin, Albin Gustav ; Schultes, Erik A ; 't Hoen, Peter A C ; Tatum, Zuotian ; Thompson, Mark ; Toyoda, Tetsuro ; Wright, Derek W ; Daub, Carsten O ; Itoh, Masayoshi ; Carninci, Piero ; Hayashizaki, Yoshihide ; Forrest, Alistair R R ; Kawaji, Hideya. / Gateways to the FANTOM5 promoter level mammalian expression atlas. In: Genome Biology (Online Edition). 2015 ; Vol. 16.
Bibtex
@article{652677ca87784ee3a4b5c44c889e3aa0,
title = "Gateways to the FANTOM5 promoter level mammalian expression atlas",
abstract = "The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas.",
author = "Marina Lizio and Jayson Harshbarger and Hisashi Shimoji and Jessica Severin and Takeya Kasukawa and Serkan Sahin and Imad Abugessaisa and Shiro Fukuda and Fumi Hori and Sachi Ishikawa-Kato and Mungall, {Christopher J} and Erik Arner and Baillie, {J Kenneth} and Nicolas Bertin and Hidemasa Bono and {de Hoon}, Michiel and Diehl, {Alexander D} and Emmanuel Dimont and Freeman, {Tom C} and Kaori Fujieda and Winston Hide and Rajaram Kaliyaperumal and Toshiaki Katayama and Timo Lassmann and Meehan, {Terrence F} and Koro Nishikata and Hiromasa Ono and Michael Rehli and Sandelin, {Albin Gustav} and Schultes, {Erik A} and {'t Hoen}, {Peter A C} and Zuotian Tatum and Mark Thompson and Tetsuro Toyoda and Wright, {Derek W} and Daub, {Carsten O} and Masayoshi Itoh and Piero Carninci and Yoshihide Hayashizaki and Forrest, {Alistair R R} and Hideya Kawaji",
year = "2015",
doi = "10.1186/s13059-014-0560-6",
language = "English",
volume = "16",
journal = "Genome Biology (Online Edition)",
issn = "1474-7596",
publisher = "BioMed Central Ltd.",
}
RIS
TY - JOUR
T1 - Gateways to the FANTOM5 promoter level mammalian expression atlas
AU - Lizio, Marina
AU - Harshbarger, Jayson
AU - Shimoji, Hisashi
AU - Severin, Jessica
AU - Kasukawa, Takeya
AU - Sahin, Serkan
AU - Abugessaisa, Imad
AU - Fukuda, Shiro
AU - Hori, Fumi
AU - Ishikawa-Kato, Sachi
AU - Mungall, Christopher J
AU - Arner, Erik
AU - Baillie, J Kenneth
AU - Bertin, Nicolas
AU - Bono, Hidemasa
AU - de Hoon, Michiel
AU - Diehl, Alexander D
AU - Dimont, Emmanuel
AU - Freeman, Tom C
AU - Fujieda, Kaori
AU - Hide, Winston
AU - Kaliyaperumal, Rajaram
AU - Katayama, Toshiaki
AU - Lassmann, Timo
AU - Meehan, Terrence F
AU - Nishikata, Koro
AU - Ono, Hiromasa
AU - Rehli, Michael
AU - Sandelin, Albin Gustav
AU - Schultes, Erik A
AU - 't Hoen, Peter A C
AU - Tatum, Zuotian
AU - Thompson, Mark
AU - Toyoda, Tetsuro
AU - Wright, Derek W
AU - Daub, Carsten O
AU - Itoh, Masayoshi
AU - Carninci, Piero
AU - Hayashizaki, Yoshihide
AU - Forrest, Alistair R R
AU - Kawaji, Hideya
PY - 2015
Y1 - 2015
N2 - The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas.
AB - The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource (http://fantom.gsc.riken.jp/5/). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas.
U2 - 10.1186/s13059-014-0560-6
DO - 10.1186/s13059-014-0560-6
M3 - Journal article
C2 - 25723102
VL - 16
JO - Genome Biology (Online Edition)
JF - Genome Biology (Online Edition)
SN - 1474-7596
M1 - 22
ER -
