Mapache: a flexible pipeline to map ancient DNA
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SUMMARY: We introduce mapache, a flexible, robust and scalable pipeline to map, quantify and impute ancient and present-day DNA in a reproducible way. Mapache is implemented in the workflow manager Snakemake and is optimized for low-space consumption, allowing to efficiently (re)map large datasets-such as reference panels and multiple extracts and libraries per sample - to one or several genomes. Mapache can easily be customized or combined with other Snakemake tools.
AVAILABILITY AND IMPLEMENTATION: Mapache is freely available on GitHub (https://github.com/sneuensc/mapache). An extensive manual is provided at https://github.com/sneuensc/mapache/wiki.
SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Originalsprog | Engelsk |
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Tidsskrift | Bioinformatics (Online) |
Vol/bind | 39 |
Udgave nummer | 2 |
Antal sider | 3 |
ISSN | 1367-4811 |
DOI | |
Status | Udgivet - 2023 |
Bibliografisk note
© The Author(s) 2023. Published by Oxford University Press.
ID: 346589617