GlycoDomainViewer: A bioinformatics tool for contextual exploration of glycoproteomes
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GlycoDomainViewer : A bioinformatics tool for contextual exploration of glycoproteomes. / Joshi, Hiren J; Jørgensen, Anja; Schjoldager, Katrine T; Halim, Adnan; Dworkin, Leo A; Steentoft, Catharina; Wandall, Hans H; Clausen, Henrik; Vakhrushev, Sergey Y.
I: Glycobiology, Bind 28, Nr. 3, 01.03.2018, s. 131-136.Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
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TY - JOUR
T1 - GlycoDomainViewer
T2 - A bioinformatics tool for contextual exploration of glycoproteomes
AU - Joshi, Hiren J
AU - Jørgensen, Anja
AU - Schjoldager, Katrine T
AU - Halim, Adnan
AU - Dworkin, Leo A
AU - Steentoft, Catharina
AU - Wandall, Hans H
AU - Clausen, Henrik
AU - Vakhrushev, Sergey Y
N1 - © The Author(s) 2017. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.
PY - 2018/3/1
Y1 - 2018/3/1
N2 - The GlycoDomainViewer is a bioinformatic tool to aid in the mining of glycoproteomic data sets from different sources and facilitate incorporation of glycosylation into studies of protein structure and function. We present a version 2.0 of GlycoDomainViewer incorporating a number of advanced features, which enhances visibility and accessibility of the wealth of glycoproteomic data being generated. The GlycoDomainViewer enables visual exploration of glycoproteomic data, incorporating information from recent N- and O-glycoproteome studies on human and animal cell lines and some organs and body fluids. The initial data comprises sites of glycosylation for N-linked, O-GalNAc, O-Fucose, O-Xyl, O-Mannose (in both human and yeast) and cytosolic O-GlcNAc type. The data made available via this tool will be regularly updated to improve the coverage of known glycosylation sites and data sets, reflecting the advances currently being made in characterisation of glycoproteomes. The tool is available at https://glycodomain.glycomics.ku.dk.
AB - The GlycoDomainViewer is a bioinformatic tool to aid in the mining of glycoproteomic data sets from different sources and facilitate incorporation of glycosylation into studies of protein structure and function. We present a version 2.0 of GlycoDomainViewer incorporating a number of advanced features, which enhances visibility and accessibility of the wealth of glycoproteomic data being generated. The GlycoDomainViewer enables visual exploration of glycoproteomic data, incorporating information from recent N- and O-glycoproteome studies on human and animal cell lines and some organs and body fluids. The initial data comprises sites of glycosylation for N-linked, O-GalNAc, O-Fucose, O-Xyl, O-Mannose (in both human and yeast) and cytosolic O-GlcNAc type. The data made available via this tool will be regularly updated to improve the coverage of known glycosylation sites and data sets, reflecting the advances currently being made in characterisation of glycoproteomes. The tool is available at https://glycodomain.glycomics.ku.dk.
KW - Journal Article
U2 - 10.1093/glycob/cwx104
DO - 10.1093/glycob/cwx104
M3 - Journal article
C2 - 29267884
VL - 28
SP - 131
EP - 136
JO - Glycobiology
JF - Glycobiology
SN - 0959-6658
IS - 3
ER -
ID: 188399203