Fatgraph models of proteins
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Fatgraph models of proteins. / Penner, R. C.; Knudsen, Michael; Wiuf, Carsten; Andersen, Jørgen Ellegaard.
In: Communications on Pure and Applied Mathematics, Vol. 63, No. 10, 01.10.2010, p. 1249-1297.Research output: Contribution to journal › Journal article › Research › peer-review
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TY - JOUR
T1 - Fatgraph models of proteins
AU - Penner, R. C.
AU - Knudsen, Michael
AU - Wiuf, Carsten
AU - Andersen, Jørgen Ellegaard
PY - 2010/10/1
Y1 - 2010/10/1
N2 - We introduce a new model of proteins that extends and enhances the traditional graphical representation by associating a combinatorial object called a fatgraph to any protein based upon its intrinsic geometry. Fatgraphs can easily be stored and manipulated as triples of permutations, and these methods are therefore amenable to fast computer implementation. Applications include the refinement of structural protein classifications and the prediction of geometric and other properties of proteins from their chemical structures.
AB - We introduce a new model of proteins that extends and enhances the traditional graphical representation by associating a combinatorial object called a fatgraph to any protein based upon its intrinsic geometry. Fatgraphs can easily be stored and manipulated as triples of permutations, and these methods are therefore amenable to fast computer implementation. Applications include the refinement of structural protein classifications and the prediction of geometric and other properties of proteins from their chemical structures.
UR - http://www.scopus.com/inward/record.url?scp=77956460775&partnerID=8YFLogxK
U2 - 10.1002/cpa.20340
DO - 10.1002/cpa.20340
M3 - Journal article
AN - SCOPUS:77956460775
VL - 63
SP - 1249
EP - 1297
JO - Communications on Pure and Applied Mathematics
JF - Communications on Pure and Applied Mathematics
SN - 0010-3640
IS - 10
ER -
ID: 203899821