Shanlin Liu
Visiting researcher
Section for Hologenomics
Øster Farimagsgade 5
1353 København K
- 2023
- E-pub ahead of print
Population genomics of the muskox' resilience in the near absence of genetic variation
Chrzanová Pecnerová, Patrícia, Lord, E., Garcia Erill, Genís, Hanghøj, Kristian Ebbesen, Rasmussen, Malthe Sebro, Meisner, Jonas, Liu, Xiaodong, van der Valk, T., Santander, Cindy Gilda, Quinn, Liam James Elgaard, Lin, Long, Liu, Shanlin, Carøe, C., Dalerum, F., Götherström, A., Måsviken, J., Vartanyan, S., Raundrup, K., Al-Chaer, Amal, Rasmussen, Linett, Hvilsom, C., Heide-Jørgensen, M. P., Sinding, Mikkel Holger Strander, Aastrup, P., Van Coeverden de Groot, P. J., Schmidt, N. M., Albrechtsen, Anders, Dalén, L., Heller, Rasmus, Moltke, Ida & Siegismund, Hans Redlef, 2023, (E-pub ahead of print) In: Molecular Ecology.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
The population genomic legacy of the second plague pandemic
Gopalakrishnan, Shyam, Ebenesersdóttir, S. S., Lundstrøm, I. K. C., Turner-Walker, G., Moore, K. H. S., Luisi, P., Margaryan, Ashot, Martin, M. D., Ellegaard, M. R., Magnússon, Ó., Sigurðsson, Á., Snorradóttir, S., Magnúsdóttir, D. N., Laffoon, J. E., van Dorp, L., Liu, Xiaodong, Moltke, Ida, Ávila-Arcos, M. C., Schraiber, J. G., Rasmussen, Simon, Juan, D., Gelabert, P., de-Dios, T., Fotaki, Anna Katerina, Iraeta Orbegozo, Miren, Vågene, Åshild Joanne, Denham, S. D., Christophersen, A., Stenøien, H. K., Vieira, F. G., Liu, Shanlin, Günther, T., Kivisild, T., Moseng, O. G., Skar, B., Cheung, C., Sandoval-Velasco, Marcela, Wales, N., Schroeder, Hannes, Campos, P. F., Guðmundsdóttir, V. B., Sicheritz-Pontén, Thomas, Petersen, Bent, Halgunset, J., Gilbert, E., Cavalleri, G. L., Hovig, E., Kockum, I., Olsson, T., Alfredsson, L., Hansen, Thomas Folkmann, Werge, Thomas, Willerslev, Eske, Balloux, F., Marques-Bonet, T., Lalueza-Fox, C., Nielsen, Rasmus, Stefánsson, K., Helgason, A. & Gilbert, M Thomas P, 2022, In: Current Biology. 32, 21, p. 4743-4751.e6Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Ancient and modern genomes unravel the evolutionary history of the rhinoceros family
Liu, Shanlin, Westbury, Michael Vincent, Dussex, N., Mitchell, K. J., Sinding, Mikkel Holger Strander, Heintzman, P. D., Duchene, David, Kapp, J. D., von Seth, J., Heiniger, H., Sánchez-Barreiro, F., Margaryan, Ashot, André-Olsen, R., Westbury, Binia De Cahsan, Meng, G., Yang, C., Chen, L., van der Valk, T., Moodley, Y., Rookmaaker, K., Bruford, M. W., Ryder, O., Steiner, C., Sonsbeek, L. G. R. B., Vartanyan, S., Guo, C., Cooper, A., Kosintsev, P., Kirillova, I., Lister, A. M., Marques-Bonet, T., Gopalakrishnan, Shyam, Dunn, Rob, Lorenzen, Eline, Shapiro, B., KU, thw266, Antoine, P. O., Dalén, L. & Gilbert, M Thomas P, 2021, In: Cell. 184, 19, p. 4874-4885.e16Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations
von Seth, J., Dussex, N., Diez-del-Molino, D., van der Valk, T., Kutschera, V. E., Kierczak, M., Steiner, C. C., Liu, Shanlin, Gilbert, M Thomas P, Sinding, Mikkel Holger Strander, Prost, S., Guschanski, K., Nathan, S. K. S. S., Brace, S., Chan, Y. L., Wheat, C. W., Skoglund, P., Ryder, O. A., Goossens, B., Gotherstrom, A. & Dalen, L., 2021, In: Nature Communications. 12, 1, 11 p., 2393.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
Historical isolation facilitates species radiation by sexual selection: Insights from Chorthippus grasshoppers
Nolen, Z. J., Yildirim, B., Irisarri, I., Liu, Shanlin, Groot Crego, C., Amby, Daniel Buchvaldt, Mayer, F., Gilbert, M Thomas P & Pereira, R. J., 2020, In: Molecular Ecology. 29, 24, p. 4985-5002Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Phylogeny of Neotropical Seirinae (Collembola, Entomobryidae) based on mitochondrial genomes
Godeiro, N. N., Antunes Pacheco, George, Liu, Shanlin, Gioia Cipola, N., Berbel-Filho, W. M., Zhang, F., Gilbert, M Thomas P & Bellini, B. C., 2020, In: Zoologica Scripta. 49, 3, p. 329-339Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Recent mitochondrial lineage extinction in the critically endangered Javan rhinoceros
Margaryan, Ashot, Sinding, Mikkel Holger Strander, Liu, Shanlin, Vieira, F. G., Chan, Y. L., Nathan, S. K. S. S., Moodley, Y., Bruford, M. W. & Gilbert, M Thomas P, 2020, In: Zoological Journal of the Linnean Society. 190, 1, p. 372-383 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The evolutionary history of extinct and living lions
de Manuel, M., Barnett, R., Sandoval-Velasco, Marcela, Yamaguchi, N., Vieira, F. G., Mendoza, M. L. Z., Liu, S., Martin, M. D., Sinding, M. S., Mak, Sarah Siu Tze, Caroe, C., Liu, Shanlin, Guo, C., Zheng, J., Zazula, G., Baryshnikov, G., Eizirik, E., Koepfli, K., Johnson, W. E., Antunes, A., Sicheritz-Pontén, Thomas, Gopalakrishnan, Shyam, Larson, G., Yang, H., O'Brien, S. J., Hansen, Anders Johannes, KU, thw266, Marques-Bonet, T. & Gilbert, M Thomas P, 2020, In: Proceedings of the National Academy of Sciences of the United States of America. 117, 20, p. 10927-10934 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Evolutionary history of Polyneoptera and its implications for our understanding of early winged insects
Wipfler, B., Letsch, H., Frandsen, P. B., Kapli, P., Mayer, C., Bartel, D., Buckley, T. R., Donath, A., Edgerly-Rooks, J. S., Fujita, M., Liu, Shanlin, Machida, R., Mashimo, Y., Misof, B., Niehuis, O., Peters, R. S., Petersen, M., Podsiadlowski, L., Schuette, K., Shimizu, S., Uchifune, T., Wilbrandt, J., Yan, E., Zhou, X. & Simon, S., 19 Feb 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 8, p. 3024-3029Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny
Cappellini, Enrico, Welker, Frido, Pandolfi, L., Ramos Madrigal, Jazmin, Samodova-Sommer, Diana, Rüther, P. L., Fotaki, Anna Katerina, Lyon, D., Moreno Mayar, J. Víctor, Bukhsianidze, M., Rakownikow Jersie-Christensen, R., Mackie, M., Ginolhac, A., Ferring, R., Tappen, M., Palkopoulou, E., Dickinson, M. R., Stafford, T. W., Chan, Y. L., Götherström, A., Nathan, S. K. S. S., Heintzman, P. D., Kapp, J. D., Kirillova, I., Moodley, Y., Agusti, J., Kahlke, R. D., Kiladze, G., Martínez-Navarro, B., Liu, Shanlin, Sandoval-Velasco, Marcela, Sinding, Mikkel Holger Strander, Kelstrup, C. D., Allentoft, Morten Erik, Orlando, L., Penkman, K., Shapiro, B., Rook, L., Dalén, L., Gilbert, M Thomas P, Olsen, Jesper Velgaard, Lordkipanidze, D. & Willerslev, Eske, 2019, In: Nature. 574, 7776, p. 103-107Research output: Contribution to journal › Journal article › Research › peer-review
ID: 143259847
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Mitochondrial capture enriches mito-DNA 100 fold, enabling PCR-free mitogenomics biodiversity analysis
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Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing
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Positive and relaxed selection associated with flight evolution and loss in insect transcriptomes
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