Multi-domain adaptation in brain MRI through paired consistency and adversarial learning

Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

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Multi-domain adaptation in brain MRI through paired consistency and adversarial learning. / Orbes-Arteaga, Mauricio; Varsavsky, Thomas; Sudre, Carole H.; Eaton-Rosen, Zach; Haddow, Lewis J.; Sørensen, Lauge; Nielsen, Mads; Pai, Akshay; Ourselin, Sébastien; Modat, Marc; Nachev, Parashkev; Cardoso, M. Jorge.

Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data First MICCAI Workshop, DART 2019 and First International Workshop, MIL3ID 2019 Shenzhen, Held in Conjunction with MICCAI 2019 Shenzhen, 2019 Proceedings. red. / Qian Wang; Fausto Milletari; Nicola Rieke; Hien V. Nguyen; Badri Roysam; Shadi Albarqouni; M. Jorge Cardoso; Ziyue Xu; Konstantinos Kamnitsas; Vishal Patel; Steve Jiang; Kevin Zhou; Khoa Luu; Ngan Le. Springer VS, 2019. s. 54-62 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Bind 11795 LNCS).

Publikation: Bidrag til bog/antologi/rapportKonferencebidrag i proceedingsForskningfagfællebedømt

Harvard

Orbes-Arteaga, M, Varsavsky, T, Sudre, CH, Eaton-Rosen, Z, Haddow, LJ, Sørensen, L, Nielsen, M, Pai, A, Ourselin, S, Modat, M, Nachev, P & Cardoso, MJ 2019, Multi-domain adaptation in brain MRI through paired consistency and adversarial learning. i Q Wang, F Milletari, N Rieke, HV Nguyen, B Roysam, S Albarqouni, MJ Cardoso, Z Xu, K Kamnitsas, V Patel, S Jiang, K Zhou, K Luu & N Le (red), Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data First MICCAI Workshop, DART 2019 and First International Workshop, MIL3ID 2019 Shenzhen, Held in Conjunction with MICCAI 2019 Shenzhen, 2019 Proceedings. Springer VS, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), bind 11795 LNCS, s. 54-62, 1st MICCAI Workshop on Domain Adaptation and Representation Transfer, DART 2019, and the 1st International Workshop on Medical Image Learning with Less Labels and Imperfect Data, MIL3ID 2019, held in conjunction with 22nd International Conference on Medical Image Computing and Computer- Assisted Intervention, MICCAI 2019, Shenzhen, Kina, 13/10/2019. https://doi.org/10.1007/978-3-030-33391-1_7

APA

Orbes-Arteaga, M., Varsavsky, T., Sudre, C. H., Eaton-Rosen, Z., Haddow, L. J., Sørensen, L., Nielsen, M., Pai, A., Ourselin, S., Modat, M., Nachev, P., & Cardoso, M. J. (2019). Multi-domain adaptation in brain MRI through paired consistency and adversarial learning. I Q. Wang, F. Milletari, N. Rieke, H. V. Nguyen, B. Roysam, S. Albarqouni, M. J. Cardoso, Z. Xu, K. Kamnitsas, V. Patel, S. Jiang, K. Zhou, K. Luu, & N. Le (red.), Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data First MICCAI Workshop, DART 2019 and First International Workshop, MIL3ID 2019 Shenzhen, Held in Conjunction with MICCAI 2019 Shenzhen, 2019 Proceedings (s. 54-62). Springer VS. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) Bind 11795 LNCS https://doi.org/10.1007/978-3-030-33391-1_7

Vancouver

Orbes-Arteaga M, Varsavsky T, Sudre CH, Eaton-Rosen Z, Haddow LJ, Sørensen L o.a. Multi-domain adaptation in brain MRI through paired consistency and adversarial learning. I Wang Q, Milletari F, Rieke N, Nguyen HV, Roysam B, Albarqouni S, Cardoso MJ, Xu Z, Kamnitsas K, Patel V, Jiang S, Zhou K, Luu K, Le N, red., Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data First MICCAI Workshop, DART 2019 and First International Workshop, MIL3ID 2019 Shenzhen, Held in Conjunction with MICCAI 2019 Shenzhen, 2019 Proceedings. Springer VS. 2019. s. 54-62. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Bind 11795 LNCS). https://doi.org/10.1007/978-3-030-33391-1_7

Author

Orbes-Arteaga, Mauricio ; Varsavsky, Thomas ; Sudre, Carole H. ; Eaton-Rosen, Zach ; Haddow, Lewis J. ; Sørensen, Lauge ; Nielsen, Mads ; Pai, Akshay ; Ourselin, Sébastien ; Modat, Marc ; Nachev, Parashkev ; Cardoso, M. Jorge. / Multi-domain adaptation in brain MRI through paired consistency and adversarial learning. Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data First MICCAI Workshop, DART 2019 and First International Workshop, MIL3ID 2019 Shenzhen, Held in Conjunction with MICCAI 2019 Shenzhen, 2019 Proceedings. red. / Qian Wang ; Fausto Milletari ; Nicola Rieke ; Hien V. Nguyen ; Badri Roysam ; Shadi Albarqouni ; M. Jorge Cardoso ; Ziyue Xu ; Konstantinos Kamnitsas ; Vishal Patel ; Steve Jiang ; Kevin Zhou ; Khoa Luu ; Ngan Le. Springer VS, 2019. s. 54-62 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Bind 11795 LNCS).

Bibtex

@inproceedings{c36f80e76d03495c9475d70e882d73d2,
title = "Multi-domain adaptation in brain MRI through paired consistency and adversarial learning",
abstract = "Supervised learning algorithms trained on medical images will often fail to generalize across changes in acquisition parameters. Recent work in domain adaptation addresses this challenge and successfully leverages labeled data in a source domain to perform well on an unlabeled target domain. Inspired by recent work in semi-supervised learning we introduce a novel method to adapt from one source domain to n target domains (as long as there is paired data covering all domains). Our multi-domain adaptation method utilises a consistency loss combined with adversarial learning. We provide results on white matter lesion hyperintensity segmentation from brain MRIs using the MICCAI 2017 challenge data as the source domain and two target domains. The proposed method significantly outperforms other domain adaptation baselines.",
keywords = "Adversarial learning, Brain MR, Domain adaptation",
author = "Mauricio Orbes-Arteaga and Thomas Varsavsky and Sudre, {Carole H.} and Zach Eaton-Rosen and Haddow, {Lewis J.} and Lauge S{\o}rensen and Mads Nielsen and Akshay Pai and S{\'e}bastien Ourselin and Marc Modat and Parashkev Nachev and Cardoso, {M. Jorge}",
year = "2019",
doi = "10.1007/978-3-030-33391-1_7",
language = "English",
isbn = "9783030333904",
series = "Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)",
publisher = "Springer VS",
pages = "54--62",
editor = "Qian Wang and Fausto Milletari and Nicola Rieke and Nguyen, {Hien V.} and Badri Roysam and Shadi Albarqouni and Cardoso, {M. Jorge} and Ziyue Xu and Konstantinos Kamnitsas and Vishal Patel and Steve Jiang and Kevin Zhou and Khoa Luu and Ngan Le",
booktitle = "Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data First MICCAI Workshop, DART 2019 and First International Workshop, MIL3ID 2019 Shenzhen, Held in Conjunction with MICCAI 2019 Shenzhen, 2019 Proceedings",
note = "1st MICCAI Workshop on Domain Adaptation and Representation Transfer, DART 2019, and the 1st International Workshop on Medical Image Learning with Less Labels and Imperfect Data, MIL3ID 2019, held in conjunction with 22nd International Conference on Medical Image Computing and Computer- Assisted Intervention, MICCAI 2019 ; Conference date: 13-10-2019 Through 17-10-2019",

}

RIS

TY - GEN

T1 - Multi-domain adaptation in brain MRI through paired consistency and adversarial learning

AU - Orbes-Arteaga, Mauricio

AU - Varsavsky, Thomas

AU - Sudre, Carole H.

AU - Eaton-Rosen, Zach

AU - Haddow, Lewis J.

AU - Sørensen, Lauge

AU - Nielsen, Mads

AU - Pai, Akshay

AU - Ourselin, Sébastien

AU - Modat, Marc

AU - Nachev, Parashkev

AU - Cardoso, M. Jorge

PY - 2019

Y1 - 2019

N2 - Supervised learning algorithms trained on medical images will often fail to generalize across changes in acquisition parameters. Recent work in domain adaptation addresses this challenge and successfully leverages labeled data in a source domain to perform well on an unlabeled target domain. Inspired by recent work in semi-supervised learning we introduce a novel method to adapt from one source domain to n target domains (as long as there is paired data covering all domains). Our multi-domain adaptation method utilises a consistency loss combined with adversarial learning. We provide results on white matter lesion hyperintensity segmentation from brain MRIs using the MICCAI 2017 challenge data as the source domain and two target domains. The proposed method significantly outperforms other domain adaptation baselines.

AB - Supervised learning algorithms trained on medical images will often fail to generalize across changes in acquisition parameters. Recent work in domain adaptation addresses this challenge and successfully leverages labeled data in a source domain to perform well on an unlabeled target domain. Inspired by recent work in semi-supervised learning we introduce a novel method to adapt from one source domain to n target domains (as long as there is paired data covering all domains). Our multi-domain adaptation method utilises a consistency loss combined with adversarial learning. We provide results on white matter lesion hyperintensity segmentation from brain MRIs using the MICCAI 2017 challenge data as the source domain and two target domains. The proposed method significantly outperforms other domain adaptation baselines.

KW - Adversarial learning

KW - Brain MR

KW - Domain adaptation

U2 - 10.1007/978-3-030-33391-1_7

DO - 10.1007/978-3-030-33391-1_7

M3 - Article in proceedings

AN - SCOPUS:85075681547

SN - 9783030333904

T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

SP - 54

EP - 62

BT - Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data First MICCAI Workshop, DART 2019 and First International Workshop, MIL3ID 2019 Shenzhen, Held in Conjunction with MICCAI 2019 Shenzhen, 2019 Proceedings

A2 - Wang, Qian

A2 - Milletari, Fausto

A2 - Rieke, Nicola

A2 - Nguyen, Hien V.

A2 - Roysam, Badri

A2 - Albarqouni, Shadi

A2 - Cardoso, M. Jorge

A2 - Xu, Ziyue

A2 - Kamnitsas, Konstantinos

A2 - Patel, Vishal

A2 - Jiang, Steve

A2 - Zhou, Kevin

A2 - Luu, Khoa

A2 - Le, Ngan

PB - Springer VS

T2 - 1st MICCAI Workshop on Domain Adaptation and Representation Transfer, DART 2019, and the 1st International Workshop on Medical Image Learning with Less Labels and Imperfect Data, MIL3ID 2019, held in conjunction with 22nd International Conference on Medical Image Computing and Computer- Assisted Intervention, MICCAI 2019

Y2 - 13 October 2019 through 17 October 2019

ER -

ID: 231757976