Fast phylogenetic DNA barcoding

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Standard

Fast phylogenetic DNA barcoding. / Terkelsen, Kasper Munch; Boomsma, Wouter Krogh; Willerslev, Eske; Nielsen, Rasmus.

I: Philosophical Transactions of the Royal Society of London. Biological Sciences, Bind 363, Nr. 1512, 2008, s. 3997-4002.

Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt

Harvard

Terkelsen, KM, Boomsma, WK, Willerslev, E & Nielsen, R 2008, 'Fast phylogenetic DNA barcoding', Philosophical Transactions of the Royal Society of London. Biological Sciences, bind 363, nr. 1512, s. 3997-4002. https://doi.org/10.1098/rstb.2008.0169

APA

Terkelsen, K. M., Boomsma, W. K., Willerslev, E., & Nielsen, R. (2008). Fast phylogenetic DNA barcoding. Philosophical Transactions of the Royal Society of London. Biological Sciences, 363(1512), 3997-4002. https://doi.org/10.1098/rstb.2008.0169

Vancouver

Terkelsen KM, Boomsma WK, Willerslev E, Nielsen R. Fast phylogenetic DNA barcoding. Philosophical Transactions of the Royal Society of London. Biological Sciences. 2008;363(1512):3997-4002. https://doi.org/10.1098/rstb.2008.0169

Author

Terkelsen, Kasper Munch ; Boomsma, Wouter Krogh ; Willerslev, Eske ; Nielsen, Rasmus. / Fast phylogenetic DNA barcoding. I: Philosophical Transactions of the Royal Society of London. Biological Sciences. 2008 ; Bind 363, Nr. 1512. s. 3997-4002.

Bibtex

@article{a2bcd5c0dc0311dd9473000ea68e967b,

title = "Fast phylogenetic DNA barcoding",

abstract = "We present a heuristic approach to the DNA assignment problem based on phylogenetic inferences using constrained neighbour joining and non-parametric bootstrapping. We show that this method performs as well as the more computationally intensive full Bayesian approach in an analysis of 500 insect DNA sequences obtained from GenBank. We also analyse a previously published dataset of environmental DNA sequences from soil from New Zealand and Siberia, and use these data to illustrate the fact that statistical approaches to the DNA assignment problem allow for more appropriate criteria for determining the taxonomic level at which a particular DNA sequence can be assigned.",

author = "Terkelsen, {Kasper Munch} and Boomsma, {Wouter Krogh} and Eske Willerslev and Rasmus Nielsen",

note = "KEYWORDS: assignment, barcoding, phylogenetics, neighbour joining",

year = "2008",

doi = "10.1098/rstb.2008.0169",

language = "English",

volume = "363",

pages = "3997--4002",

journal = "Philosophical Transactions of the Royal Society B: Biological Sciences",

issn = "0962-8436",

publisher = "The/Royal Society",

number = "1512",

}

RIS

TY - JOUR

T1 - Fast phylogenetic DNA barcoding

AU - Terkelsen, Kasper Munch

AU - Boomsma, Wouter Krogh

AU - Willerslev, Eske

AU - Nielsen, Rasmus

N1 - KEYWORDS: assignment, barcoding, phylogenetics, neighbour joining

PY - 2008

Y1 - 2008

N2 - We present a heuristic approach to the DNA assignment problem based on phylogenetic inferences using constrained neighbour joining and non-parametric bootstrapping. We show that this method performs as well as the more computationally intensive full Bayesian approach in an analysis of 500 insect DNA sequences obtained from GenBank. We also analyse a previously published dataset of environmental DNA sequences from soil from New Zealand and Siberia, and use these data to illustrate the fact that statistical approaches to the DNA assignment problem allow for more appropriate criteria for determining the taxonomic level at which a particular DNA sequence can be assigned.

AB - We present a heuristic approach to the DNA assignment problem based on phylogenetic inferences using constrained neighbour joining and non-parametric bootstrapping. We show that this method performs as well as the more computationally intensive full Bayesian approach in an analysis of 500 insect DNA sequences obtained from GenBank. We also analyse a previously published dataset of environmental DNA sequences from soil from New Zealand and Siberia, and use these data to illustrate the fact that statistical approaches to the DNA assignment problem allow for more appropriate criteria for determining the taxonomic level at which a particular DNA sequence can be assigned.

U2 - 10.1098/rstb.2008.0169

DO - 10.1098/rstb.2008.0169

M3 - Journal article

C2 - 18852104

VL - 363

SP - 3997

EP - 4002

JO - Philosophical Transactions of the Royal Society B: Biological Sciences

JF - Philosophical Transactions of the Royal Society B: Biological Sciences

SN - 0962-8436

IS - 1512

ER -

ID: 9541977