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A recent bottleneck of Y chromosome diversity coincides with a global change in culture. / Karmin, Monika; Saag, Lauri; Vicente, Mário; Wilson Sayres, Melissa A; Järve, Mari; Talas, Ulvi Gerst; Rootsi, Siiri; Ilumäe, Anne-Mai; Mägi, Reedik; Mitt, Mario; Pagani, Luca; Puurand, Tarmo; Faltyskova, Zuzana; Clemente, Florian; Cardona, Alexia; Metspalu, Ene; Sahakyan, Hovhannes; Yunusbayev, Bayazit; Hudjashov, Georgi; DeGiorgio, Michael; Loogväli, Eva-Liis; Eichstaedt, Christina; Eelmets, Mikk; Chaubey, Gyaneshwer; Tambets, Kristiina; Litvinov, Sergei; Mormina, Maru; Xue, Yali; Ayub, Qasim; Zoraqi, Grigor; Korneliussen, Thorfinn Sand; Akhatova, Farida; Lachance, Joseph; Tishkoff, Sarah; Momynaliev, Kuvat; Ricaut, François-Xavier; Kusuma, Pradiptajati; Razafindrazaka, Harilanto; Pierron, Denis; Cox, Murray P; Sultana, Gazi Nurun Nahar; Willerslev, Rane; Muller, Craig; Westaway, Michael; Lambert, David; Skaro, Vedrana; Kovačevic, Lejla; Turdikulova, Shahlo; Dalimova, Dilbar; Khusainova, Rita; Trofimova, Natalya; Akhmetova, Vita; Khidiyatova, Irina; Lichman, Daria V; Isakova, Jainagul; Pocheshkhova, Elvira; Sabitov, Zhaxylyk; Barashkov, Nikolay A; Nymadawa, Pagbajabyn; Mihailov, Evelin; Seng, Joseph Wee Tien; Evseeva, Irina; Migliano, Andrea Bamberg; Abdullah, Syafiq; Andriadze, George; Primorac, Dragan; Atramentova, Lubov; Utevska, Olga; Yepiskoposyan, Levon; Marjanovic, Damir; Kushniarevich, Alena; Behar, Doron M; Gilissen, Christian; Vissers, Lisenka; Veltman, Joris A; Balanovska, Elena; Derenko, Miroslava; Malyarchuk, Boris; Metspalu, Andres; Fedorova, Sardana; Eriksson, Anders; Manica, Andrea; Mendez, Fernando L; Karafet, Tatiana M; Veeramah, Krishna R; Bradman, Neil; Hammer, Michael F; Osipova, Ludmila P; Balanovsky, Oleg; Khusnutdinova, Elza K; Johnsen, Knut; Remm, Maido; Thomas, Mark G; Tyler-Smith, Chris; Underhill, Peter A; Willerslev, Eske; Nielsen, Rasmus; Metspalu, Mait; Villems, Richard; Kivisild, Toomas.
I:
Genome Research, Bind 25, Nr. 4, 2015, s. 459-466.
Publikation: Bidrag til tidsskrift › Tidsskriftartikel › Forskning › fagfællebedømt
Harvard
Karmin, M, Saag, L, Vicente, M, Wilson Sayres, MA, Järve, M, Talas, UG, Rootsi, S, Ilumäe, A-M, Mägi, R, Mitt, M, Pagani, L, Puurand, T, Faltyskova, Z, Clemente, F, Cardona, A, Metspalu, E, Sahakyan, H, Yunusbayev, B, Hudjashov, G, DeGiorgio, M, Loogväli, E-L, Eichstaedt, C, Eelmets, M, Chaubey, G, Tambets, K, Litvinov, S, Mormina, M, Xue, Y, Ayub, Q, Zoraqi, G
, Korneliussen, TS, Akhatova, F, Lachance, J, Tishkoff, S, Momynaliev, K, Ricaut, F-X, Kusuma, P, Razafindrazaka, H, Pierron, D, Cox, MP, Sultana, GNN, Willerslev, R, Muller, C, Westaway, M, Lambert, D, Skaro, V, Kovačevic, L, Turdikulova, S, Dalimova, D, Khusainova, R, Trofimova, N, Akhmetova, V, Khidiyatova, I, Lichman, DV, Isakova, J, Pocheshkhova, E, Sabitov, Z, Barashkov, NA, Nymadawa, P, Mihailov, E, Seng, JWT, Evseeva, I, Migliano, AB, Abdullah, S, Andriadze, G, Primorac, D, Atramentova, L, Utevska, O, Yepiskoposyan, L, Marjanovic, D, Kushniarevich, A, Behar, DM, Gilissen, C, Vissers, L, Veltman, JA, Balanovska, E, Derenko, M, Malyarchuk, B, Metspalu, A, Fedorova, S, Eriksson, A, Manica, A, Mendez, FL, Karafet, TM, Veeramah, KR, Bradman, N, Hammer, MF, Osipova, LP, Balanovsky, O, Khusnutdinova, EK, Johnsen, K, Remm, M, Thomas, MG, Tyler-Smith, C, Underhill, PA
, Willerslev, E, Nielsen, R, Metspalu, M, Villems, R & Kivisild, T 2015, '
A recent bottleneck of Y chromosome diversity coincides with a global change in culture',
Genome Research, bind 25, nr. 4, s. 459-466.
https://doi.org/10.1101/gr.186684.114APA
Karmin, M., Saag, L., Vicente, M., Wilson Sayres, M. A., Järve, M., Talas, U. G., Rootsi, S., Ilumäe, A-M., Mägi, R., Mitt, M., Pagani, L., Puurand, T., Faltyskova, Z., Clemente, F., Cardona, A., Metspalu, E., Sahakyan, H., Yunusbayev, B., Hudjashov, G., ... Kivisild, T. (2015).
A recent bottleneck of Y chromosome diversity coincides with a global change in culture.
Genome Research,
25(4), 459-466.
https://doi.org/10.1101/gr.186684.114Vancouver
Karmin M, Saag L, Vicente M, Wilson Sayres MA, Järve M, Talas UG o.a.
A recent bottleneck of Y chromosome diversity coincides with a global change in culture.
Genome Research. 2015;25(4):459-466.
https://doi.org/10.1101/gr.186684.114Author
Karmin, Monika ; Saag, Lauri ; Vicente, Mário ; Wilson Sayres, Melissa A ; Järve, Mari ; Talas, Ulvi Gerst ; Rootsi, Siiri ; Ilumäe, Anne-Mai ; Mägi, Reedik ; Mitt, Mario ; Pagani, Luca ; Puurand, Tarmo ; Faltyskova, Zuzana ; Clemente, Florian ; Cardona, Alexia ; Metspalu, Ene ; Sahakyan, Hovhannes ; Yunusbayev, Bayazit ; Hudjashov, Georgi ; DeGiorgio, Michael ; Loogväli, Eva-Liis ; Eichstaedt, Christina ; Eelmets, Mikk ; Chaubey, Gyaneshwer ; Tambets, Kristiina ; Litvinov, Sergei ; Mormina, Maru ; Xue, Yali ; Ayub, Qasim ; Zoraqi, Grigor ; Korneliussen, Thorfinn Sand ; Akhatova, Farida ; Lachance, Joseph ; Tishkoff, Sarah ; Momynaliev, Kuvat ; Ricaut, François-Xavier ; Kusuma, Pradiptajati ; Razafindrazaka, Harilanto ; Pierron, Denis ; Cox, Murray P ; Sultana, Gazi Nurun Nahar ; Willerslev, Rane ; Muller, Craig ; Westaway, Michael ; Lambert, David ; Skaro, Vedrana ; Kovačevic, Lejla ; Turdikulova, Shahlo ; Dalimova, Dilbar ; Khusainova, Rita ; Trofimova, Natalya ; Akhmetova, Vita ; Khidiyatova, Irina ; Lichman, Daria V ; Isakova, Jainagul ; Pocheshkhova, Elvira ; Sabitov, Zhaxylyk ; Barashkov, Nikolay A ; Nymadawa, Pagbajabyn ; Mihailov, Evelin ; Seng, Joseph Wee Tien ; Evseeva, Irina ; Migliano, Andrea Bamberg ; Abdullah, Syafiq ; Andriadze, George ; Primorac, Dragan ; Atramentova, Lubov ; Utevska, Olga ; Yepiskoposyan, Levon ; Marjanovic, Damir ; Kushniarevich, Alena ; Behar, Doron M ; Gilissen, Christian ; Vissers, Lisenka ; Veltman, Joris A ; Balanovska, Elena ; Derenko, Miroslava ; Malyarchuk, Boris ; Metspalu, Andres ; Fedorova, Sardana ; Eriksson, Anders ; Manica, Andrea ; Mendez, Fernando L ; Karafet, Tatiana M ; Veeramah, Krishna R ; Bradman, Neil ; Hammer, Michael F ; Osipova, Ludmila P ; Balanovsky, Oleg ; Khusnutdinova, Elza K ; Johnsen, Knut ; Remm, Maido ; Thomas, Mark G ; Tyler-Smith, Chris ; Underhill, Peter A ; Willerslev, Eske ; Nielsen, Rasmus ; Metspalu, Mait ; Villems, Richard ; Kivisild, Toomas. / A recent bottleneck of Y chromosome diversity coincides with a global change in culture. I: Genome Research. 2015 ; Bind 25, Nr. 4. s. 459-466.
Bibtex
@article{106f05eccb904e54ba1d46dd61fbe92a,
title = "A recent bottleneck of Y chromosome diversity coincides with a global change in culture",
abstract = "It is commonly thought that human genetic diversity in non-African populations was shaped primarily by an out-of-Africa dispersal 50-100 thousand yr ago (kya). Here, we present a study of 456 geographically diverse high-coverage Y chromosome sequences, including 299 newly reported samples. Applying ancient DNA calibration, we date the Y-chromosomal most recent common ancestor (MRCA) in Africa at 254 (95% CI 192-307) kya and detect a cluster of major non-African founder haplogroups in a narrow time interval at 47-52 kya, consistent with a rapid initial colonization model of Eurasia and Oceania after the out-of-Africa bottleneck. In contrast to demographic reconstructions based on mtDNA, we infer a second strong bottleneck in Y-chromosome lineages dating to the last 10 ky. We hypothesize that this bottleneck is caused by cultural changes affecting variance of reproductive success among males.",
author = "Monika Karmin and Lauri Saag and M{\'a}rio Vicente and {Wilson Sayres}, {Melissa A} and Mari J{\"a}rve and Talas, {Ulvi Gerst} and Siiri Rootsi and Anne-Mai Ilum{\"a}e and Reedik M{\"a}gi and Mario Mitt and Luca Pagani and Tarmo Puurand and Zuzana Faltyskova and Florian Clemente and Alexia Cardona and Ene Metspalu and Hovhannes Sahakyan and Bayazit Yunusbayev and Georgi Hudjashov and Michael DeGiorgio and Eva-Liis Loogv{\"a}li and Christina Eichstaedt and Mikk Eelmets and Gyaneshwer Chaubey and Kristiina Tambets and Sergei Litvinov and Maru Mormina and Yali Xue and Qasim Ayub and Grigor Zoraqi and Korneliussen, {Thorfinn Sand} and Farida Akhatova and Joseph Lachance and Sarah Tishkoff and Kuvat Momynaliev and Fran{\c c}ois-Xavier Ricaut and Pradiptajati Kusuma and Harilanto Razafindrazaka and Denis Pierron and Cox, {Murray P} and Sultana, {Gazi Nurun Nahar} and Rane Willerslev and Craig Muller and Michael Westaway and David Lambert and Vedrana Skaro and Lejla Kova{\v c}evic and Shahlo Turdikulova and Dilbar Dalimova and Rita Khusainova and Natalya Trofimova and Vita Akhmetova and Irina Khidiyatova and Lichman, {Daria V} and Jainagul Isakova and Elvira Pocheshkhova and Zhaxylyk Sabitov and Barashkov, {Nikolay A} and Pagbajabyn Nymadawa and Evelin Mihailov and Seng, {Joseph Wee Tien} and Irina Evseeva and Migliano, {Andrea Bamberg} and Syafiq Abdullah and George Andriadze and Dragan Primorac and Lubov Atramentova and Olga Utevska and Levon Yepiskoposyan and Damir Marjanovic and Alena Kushniarevich and Behar, {Doron M} and Christian Gilissen and Lisenka Vissers and Veltman, {Joris A} and Elena Balanovska and Miroslava Derenko and Boris Malyarchuk and Andres Metspalu and Sardana Fedorova and Anders Eriksson and Andrea Manica and Mendez, {Fernando L} and Karafet, {Tatiana M} and Veeramah, {Krishna R} and Neil Bradman and Hammer, {Michael F} and Osipova, {Ludmila P} and Oleg Balanovsky and Khusnutdinova, {Elza K} and Knut Johnsen and Maido Remm and Thomas, {Mark G} and Chris Tyler-Smith and Underhill, {Peter A} and Eske Willerslev and Rasmus Nielsen and Mait Metspalu and Richard Villems and Toomas Kivisild",
note = "{\textcopyright} 2015 Karmin et al.; Published by Cold Spring Harbor Laboratory Press.",
year = "2015",
doi = "10.1101/gr.186684.114",
language = "English",
volume = "25",
pages = "459--466",
journal = "Genome Research",
issn = "1088-9051",
publisher = "Cold Spring Harbor Laboratory Press",
number = "4",
}
RIS
TY - JOUR
T1 - A recent bottleneck of Y chromosome diversity coincides with a global change in culture
AU - Karmin, Monika
AU - Saag, Lauri
AU - Vicente, Mário
AU - Wilson Sayres, Melissa A
AU - Järve, Mari
AU - Talas, Ulvi Gerst
AU - Rootsi, Siiri
AU - Ilumäe, Anne-Mai
AU - Mägi, Reedik
AU - Mitt, Mario
AU - Pagani, Luca
AU - Puurand, Tarmo
AU - Faltyskova, Zuzana
AU - Clemente, Florian
AU - Cardona, Alexia
AU - Metspalu, Ene
AU - Sahakyan, Hovhannes
AU - Yunusbayev, Bayazit
AU - Hudjashov, Georgi
AU - DeGiorgio, Michael
AU - Loogväli, Eva-Liis
AU - Eichstaedt, Christina
AU - Eelmets, Mikk
AU - Chaubey, Gyaneshwer
AU - Tambets, Kristiina
AU - Litvinov, Sergei
AU - Mormina, Maru
AU - Xue, Yali
AU - Ayub, Qasim
AU - Zoraqi, Grigor
AU - Korneliussen, Thorfinn Sand
AU - Akhatova, Farida
AU - Lachance, Joseph
AU - Tishkoff, Sarah
AU - Momynaliev, Kuvat
AU - Ricaut, François-Xavier
AU - Kusuma, Pradiptajati
AU - Razafindrazaka, Harilanto
AU - Pierron, Denis
AU - Cox, Murray P
AU - Sultana, Gazi Nurun Nahar
AU - Willerslev, Rane
AU - Muller, Craig
AU - Westaway, Michael
AU - Lambert, David
AU - Skaro, Vedrana
AU - Kovačevic, Lejla
AU - Turdikulova, Shahlo
AU - Dalimova, Dilbar
AU - Khusainova, Rita
AU - Trofimova, Natalya
AU - Akhmetova, Vita
AU - Khidiyatova, Irina
AU - Lichman, Daria V
AU - Isakova, Jainagul
AU - Pocheshkhova, Elvira
AU - Sabitov, Zhaxylyk
AU - Barashkov, Nikolay A
AU - Nymadawa, Pagbajabyn
AU - Mihailov, Evelin
AU - Seng, Joseph Wee Tien
AU - Evseeva, Irina
AU - Migliano, Andrea Bamberg
AU - Abdullah, Syafiq
AU - Andriadze, George
AU - Primorac, Dragan
AU - Atramentova, Lubov
AU - Utevska, Olga
AU - Yepiskoposyan, Levon
AU - Marjanovic, Damir
AU - Kushniarevich, Alena
AU - Behar, Doron M
AU - Gilissen, Christian
AU - Vissers, Lisenka
AU - Veltman, Joris A
AU - Balanovska, Elena
AU - Derenko, Miroslava
AU - Malyarchuk, Boris
AU - Metspalu, Andres
AU - Fedorova, Sardana
AU - Eriksson, Anders
AU - Manica, Andrea
AU - Mendez, Fernando L
AU - Karafet, Tatiana M
AU - Veeramah, Krishna R
AU - Bradman, Neil
AU - Hammer, Michael F
AU - Osipova, Ludmila P
AU - Balanovsky, Oleg
AU - Khusnutdinova, Elza K
AU - Johnsen, Knut
AU - Remm, Maido
AU - Thomas, Mark G
AU - Tyler-Smith, Chris
AU - Underhill, Peter A
AU - Willerslev, Eske
AU - Nielsen, Rasmus
AU - Metspalu, Mait
AU - Villems, Richard
AU - Kivisild, Toomas
N1 - © 2015 Karmin et al.; Published by Cold Spring Harbor Laboratory Press.
PY - 2015
Y1 - 2015
N2 - It is commonly thought that human genetic diversity in non-African populations was shaped primarily by an out-of-Africa dispersal 50-100 thousand yr ago (kya). Here, we present a study of 456 geographically diverse high-coverage Y chromosome sequences, including 299 newly reported samples. Applying ancient DNA calibration, we date the Y-chromosomal most recent common ancestor (MRCA) in Africa at 254 (95% CI 192-307) kya and detect a cluster of major non-African founder haplogroups in a narrow time interval at 47-52 kya, consistent with a rapid initial colonization model of Eurasia and Oceania after the out-of-Africa bottleneck. In contrast to demographic reconstructions based on mtDNA, we infer a second strong bottleneck in Y-chromosome lineages dating to the last 10 ky. We hypothesize that this bottleneck is caused by cultural changes affecting variance of reproductive success among males.
AB - It is commonly thought that human genetic diversity in non-African populations was shaped primarily by an out-of-Africa dispersal 50-100 thousand yr ago (kya). Here, we present a study of 456 geographically diverse high-coverage Y chromosome sequences, including 299 newly reported samples. Applying ancient DNA calibration, we date the Y-chromosomal most recent common ancestor (MRCA) in Africa at 254 (95% CI 192-307) kya and detect a cluster of major non-African founder haplogroups in a narrow time interval at 47-52 kya, consistent with a rapid initial colonization model of Eurasia and Oceania after the out-of-Africa bottleneck. In contrast to demographic reconstructions based on mtDNA, we infer a second strong bottleneck in Y-chromosome lineages dating to the last 10 ky. We hypothesize that this bottleneck is caused by cultural changes affecting variance of reproductive success among males.
U2 - 10.1101/gr.186684.114
DO - 10.1101/gr.186684.114
M3 - Journal article
C2 - 25770088
VL - 25
SP - 459
EP - 466
JO - Genome Research
JF - Genome Research
SN - 1088-9051
IS - 4
ER -
