Non-genotype-specific role of the hepatitis C virus 5' untranslated region in virus production and in inhibition by interferon

Research output: Contribution to journalJournal articleResearchpeer-review

  • Yi-Ping Li
  • Santseharay Ramirez
  • Judith M Gottwein
  • Bukh, Jens
The 5' untranslated region (5'UTR) of hepatitis C virus (HCV) is structured into four domains (I-IV) with numerous genotype-specific nucleotides. It is unknown whether the polymorphisms confer genotype-specific functions to the 5'UTR. Using viable JFH1-based Core-NS2 recombinants, we developed and characterized HCV genotypes 1-7 recombinants with highly diverse 5'UTRs (genotypes 1a and 3a), 2a recombinants (J6/JFH1) with 5'UTR of genotypes 1-6 or with heterotypic chimeric (1a/3a and 3a/1a) 5'UTR domains I, II or III, and 1a recombinants with 5'UTR domain I of genotypes 1-6. All were fully functional in Huh7.5 cells; therefore, the 5'UTR apparently functions in a non-genotype-specific manner in HCV production in vitro. However, adenine at the 5'-terminus was required. We demonstrated that J6/JFH1 with 5'UTR of genotypes 1-6 responded similarly to interferon-a2b. This study provides novel insight into the role of the 5'UTR in the HCV life cycle and facilitates HCV basic research and testing of 5'UTR-targeting antivirals.
Original languageEnglish
JournalVirology: Research and Treatment
Volume421
Issue number2
Pages (from-to)222-34
Number of pages13
ISSN1178-122X
DOIs
Publication statusPublished - 2011

    Research areas

  • 5' Untranslated Regions, Base Sequence, Cell Line, Genotype, Hepacivirus, Humans, Interferon-alpha, RNA, Viral, Recombinant Proteins, Sequence Analysis, DNA, Viral Core Proteins, Virus Replication

ID: 40329288