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Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies

Publikation: Forskning - peer reviewTidsskriftartikel

Standard

Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies. / Thorsen, Jonathan; Brejnrod, Asker Daniel; Mortensen, Martin Steen; Rasmussen, Morten Arendt; Stokholm, Jakob; Abu Al-Soud, Waleed; Sørensen, Søren Johannes; Bisgaard, Hans; Waage, Johannes Eichler.

I: Microbiome, Bind 4, 62, 2016.

Publikation: Forskning - peer reviewTidsskriftartikel

Harvard

Thorsen, J, Brejnrod, AD, Mortensen, MS, Rasmussen, MA, Stokholm, J, Abu Al-Soud, W, Sørensen, SJ, Bisgaard, H & Waage, JE 2016, 'Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies' Microbiome, bind 4, 62. DOI: 10.1186/s40168-016-0208-8

APA

Thorsen, J., Brejnrod, A. D., Mortensen, M. S., Rasmussen, M. A., Stokholm, J., Abu Al-Soud, W., ... Waage, J. E. (2016). Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies. Microbiome, 4, [62]. DOI: 10.1186/s40168-016-0208-8

Vancouver

Thorsen J, Brejnrod AD, Mortensen MS, Rasmussen MA, Stokholm J, Abu Al-Soud W o.a. Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies. Microbiome. 2016;4. 62. Tilgængelig fra, DOI: 10.1186/s40168-016-0208-8

Author

Thorsen, Jonathan ; Brejnrod, Asker Daniel ; Mortensen, Martin Steen ; Rasmussen, Morten Arendt ; Stokholm, Jakob ; Abu Al-Soud, Waleed ; Sørensen, Søren Johannes ; Bisgaard, Hans ; Waage, Johannes Eichler. / Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies. I: Microbiome. 2016 ; Bind 4.

Bibtex

@article{7c16c2ee215b401393965cec096b149e,
title = "Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies",
keywords = "16S sequencing, Microbiome, Benchmark, Differential relative abundance, Beta-diversity",
author = "Jonathan Thorsen and Brejnrod, {Asker Daniel} and Mortensen, {Martin Steen} and Rasmussen, {Morten Arendt} and Jakob Stokholm and {Abu Al-Soud}, Waleed and Sørensen, {Søren Johannes} and Hans Bisgaard and Waage, {Johannes Eichler}",
year = "2016",
doi = "10.1186/s40168-016-0208-8",
volume = "4",
journal = "Microbiome",
issn = "2049-2618",
publisher = "BioMed Central Ltd.",

}

RIS

TY - JOUR

T1 - Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies

AU - Thorsen,Jonathan

AU - Brejnrod,Asker Daniel

AU - Mortensen,Martin Steen

AU - Rasmussen,Morten Arendt

AU - Stokholm,Jakob

AU - Abu Al-Soud,Waleed

AU - Sørensen,Søren Johannes

AU - Bisgaard,Hans

AU - Waage,Johannes Eichler

PY - 2016

Y1 - 2016

KW - 16S sequencing

KW - Microbiome

KW - Benchmark

KW - Differential relative abundance

KW - Beta-diversity

U2 - 10.1186/s40168-016-0208-8

DO - 10.1186/s40168-016-0208-8

M3 - Journal article

VL - 4

JO - Microbiome

T2 - Microbiome

JF - Microbiome

SN - 2049-2618

M1 - 62

ER -

ID: 170191872